RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 HSD17B10Q99714 261 aaKnown RBP7.91□□□□□ -1.14
HDAC3-205ENST00000469550 DNAJC4Q9NNZ3 241 aa7.91□□□□□ -1.14
HDAC3-205ENST00000469550 FBXL7Q9UJT9 491 aa7.91□□□□□ -1.14
HDAC3-205ENST00000469550 ZNF253O75346 499 aa7.9□□□□□ -1.14
HDAC3-205ENST00000469550 NXPH2O95156 264 aa7.9□□□□□ -1.14
HDAC3-205ENST00000469550 GOSR1O95249 250 aa7.9□□□□□ -1.14
HDAC3-205ENST00000469550 MT-CO2P00403 227 aa7.9□□□□□ -1.14
HDAC3-205ENST00000469550 CEACAM8P31997 349 aaPredicted RBP7.9□□□□□ -1.14
HDAC3-205ENST00000469550 EDDM3BP56851 147 aa7.9□□□□□ -1.14
HDAC3-205ENST00000469550 SUMO1P63165 101 aaKnown RBP7.9□□□□□ -1.14
HDAC3-205ENST00000469550 TREML4Q6UXN2 200 aa7.9□□□□□ -1.14
HDAC3-205ENST00000469550 SEM1Q6ZVN7 128 aa7.9□□□□□ -1.14
HDAC3-205ENST00000469550 MMD2Q8IY49 270 aa7.9□□□□□ -1.14
HDAC3-205ENST00000469550 KLHDC1Q8N7A1 406 aa7.9□□□□□ -1.14
HDAC3-205ENST00000469550 SCCPDHQ8NBX0 429 aa7.9□□□□□ -1.14
HDAC3-205ENST00000469550 FAM222BQ8WU58 562 aa7.9□□□□□ -1.14
HDAC3-205ENST00000469550 MBD6Q96DN6 1003 aa7.9□□□□□ -1.14
HDAC3-205ENST00000469550 EAF1Q96JC9 268 aaPredicted RBP7.9□□□□□ -1.14
HDAC3-205ENST00000469550 UHRF2Q96PU4 802 aa7.9□□□□□ -1.14
HDAC3-205ENST00000469550 GP6Q9HCN6 339 aa7.9□□□□□ -1.14
HDAC3-205ENST00000469550 YLPM1P49750 1951 aaKnown RBP7.9□□□□□ -1.15
HDAC3-205ENST00000469550 AHRRA9YTQ3 701 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 SNURFLB1AK76 121 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 C12orf77C9JDV5 145 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 PRSS46E5RG02 174 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 K7EN84 100 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 OR5G3P0C626 314 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 IGLC2P0DOY2 106 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 IGLC3P0DOY3 106 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 GDF1P27539 372 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 GCHFRP30047 84 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 IER3P46695 156 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 PRRX1P54821 245 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 CLDN18P56856 261 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 RPL31P62899 125 aaKnown RBP7.9□□□□□ -1.15
HDAC3-205ENST00000469550 PSG7Q13046 419 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 BATFQ16520 125 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 WDR86Q86TI4 376 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 UBALD1Q8TB05 177 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 RNASE6Q93091 150 aaKnown RBP7.9□□□□□ -1.15
HDAC3-205ENST00000469550 GGTLC1Q9BX51 225 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 GNB4Q9HAV0 340 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 NRN1Q9NPD7 142 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 V9GYV3 84 aa7.9□□□□□ -1.15
HDAC3-205ENST00000469550 SPG11Q96JI7 2443 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 NF1P21359 2839 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 SETD2Q9BYW2 2564 aaPredicted RBP7.89□□□□□ -1.15
HDAC3-205ENST00000469550 C20orf202A1L168 122 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 RBMXL2O75526 392 aaKnown RBP7.89□□□□□ -1.15
HDAC3-205ENST00000469550 THBS3P49746 956 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 FOXG1P55316 489 aaPredicted RBP7.89□□□□□ -1.15
HDAC3-205ENST00000469550 KLF3P57682 345 aaPredicted RBP7.89□□□□□ -1.15
HDAC3-205ENST00000469550 RPS16P62249 146 aaKnown RBP7.89□□□□□ -1.15
HDAC3-205ENST00000469550 CX3CL1P78423 397 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 SPATA45Q537H7 98 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 C9orf135Q5VTT2 229 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 C19orf35Q6ZS72 473 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 TUSC5Q8IXB3 177 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 OR52L2PQ8NGH6 319 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 FAM216AQ8WUB2 273 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 NRGNQ92686 78 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 APH1AQ96BI3 265 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 STARD4Q96DR4 205 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 KCNS1Q96KK3 526 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 MGST2Q99735 147 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 HES4Q9HCC6 221 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 LAMTOR2Q9Y2Q5 125 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 MRPS16Q9Y3D3 137 aaKnown RBP7.89□□□□□ -1.15
HDAC3-205ENST00000469550 TBL2Q9Y4P3 447 aaKnown RBP7.89□□□□□ -1.15
HDAC3-205ENST00000469550 YTHDF2Q9Y5A9 579 aaKnown RBP7.89□□□□□ -1.15
HDAC3-205ENST00000469550 ANKHD1Q8IWZ3 2542 aaKnown RBP7.89□□□□□ -1.15
HDAC3-205ENST00000469550 MTORP42345 2549 aa7.89□□□□□ -1.15
HDAC3-205ENST00000469550 ITPR3Q14573 2671 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 F2Z2F3 143 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 C3orf80F5H4A9 247 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 SLC17A3O00476 420 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 RRHO14718 337 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 TCF21O43680 179 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 HYPMO75409 117 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 NDUFB8O95169 186 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 HAND1O96004 215 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 HBZP02008 142 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 VDAC2P45880 294 aaPredicted RBP7.88□□□□□ -1.15
HDAC3-205ENST00000469550 KRTDAPP60985 99 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 RHOBP62745 196 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 HTD2P86397 168 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 MMDQ15546 238 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 GABRA6Q16445 453 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 GAL3ST2Q9H3Q3 398 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 NPVFQ9HCQ7 196 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 OSTCQ9NRP0 149 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 LSM4Q9Y4Z0 139 aaKnown RBP7.88□□□□□ -1.15
HDAC3-205ENST00000469550 A0A1W2PS18 150 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 ITGB1BP1O14713 200 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 TOMM40O96008 361 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 HOXB4P17483 251 aaPredicted RBP7.88□□□□□ -1.15
HDAC3-205ENST00000469550 BMP5P22003 454 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 TFPI2P48307 235 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 AMTP48728 403 aa7.88□□□□□ -1.15
HDAC3-205ENST00000469550 TMEM136Q6ZRR5 245 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms