RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 HIST1H2BNQ99877 126 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 HIST1H2BMQ99879 126 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 PCGF1Q9BSM1 259 aa12.13□□□□□ -0.47
NUP54-217ENST00000514987 SHISA9B4DS77 424 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 B9A039 149 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 H0YJW9 148 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 IGKV1-16P04430 117 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 SAA1P0DJI8 122 aaPredicted RBP12.12□□□□□ -0.47
NUP54-217ENST00000514987 S100A2P29034 98 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 APOBEC3AP31941 199 aaPredicted RBP12.12□□□□□ -0.47
NUP54-217ENST00000514987 PRR20EP86478 221 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 PRR20CP86479 221 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 PRR20DP86480 221 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 PRR20BP86481 221 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 PRR20AP86496 221 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 KCNIP4Q6PIL6 250 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 PNKDQ8N490 385 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 STPG3Q8N7X2 389 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 OR51G1Q8NGK1 321 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 OR4C13Q8NGP0 309 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 CACNG8Q8WXS5 425 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 H1FXQ92522 213 aaKnown RBP12.12□□□□□ -0.47
NUP54-217ENST00000514987 FLYWCH2Q96CP2 140 aaKnown RBP12.12□□□□□ -0.47
NUP54-217ENST00000514987 C1orf159Q96HA4 380 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 IMMP2LQ96T52 175 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 SSX3Q99909 188 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 MRPL20Q9BYC9 149 aaKnown RBP12.12□□□□□ -0.47
NUP54-217ENST00000514987 COMMD5Q9GZQ3 224 aa12.12□□□□□ -0.47
NUP54-217ENST00000514987 PRRC2CQ9Y520 2896 aaKnown RBP12.12□□□□□ -0.47
NUP54-217ENST00000514987 A0A087X0M5 115 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 A0A1B0GX30 115 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 A0A1W2PN81 502 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 CD3EP07766 207 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 IL3RAP26951 378 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 GCHFRP30047 84 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 MC5RP33032 325 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 CHRNA7P36544 502 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 GPX4P36969 197 aaPredicted RBP12.11□□□□□ -0.47
NUP54-217ENST00000514987 ZNF137PP52743 207 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 GNB1P62873 340 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 ERHP84090 104 aaKnown RBP12.11□□□□□ -0.47
NUP54-217ENST00000514987 OR10X1Q8NGY0 326 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 TMEM167AQ8TBQ9 72 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 ABHD5Q8WTS1 349 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 HARBI1Q96MB7 349 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 SLC45A2Q9UMX9 530 aa12.11□□□□□ -0.47
NUP54-217ENST00000514987 TRBV23-1A0A0A0MS06 115 aa12.1□□□□□ -0.47
NUP54-217ENST00000514987 SRRM4A7MD48 611 aaKnown RBP12.1□□□□□ -0.47
NUP54-217ENST00000514987 E7EQL1 145 aa12.1□□□□□ -0.47
NUP54-217ENST00000514987 PPP5D1E7EU14 171 aa12.1□□□□□ -0.47
NUP54-217ENST00000514987 TRGC1P0CF51 173 aa12.1□□□□□ -0.47
NUP54-217ENST00000514987 CCL3L1P16619 93 aa12.1□□□□□ -0.47
NUP54-217ENST00000514987 NPPCP23582 126 aa12.1□□□□□ -0.47
NUP54-217ENST00000514987 RPL8P62917 257 aaKnown RBP12.1□□□□□ -0.47
NUP54-217ENST00000514987 SSX2Q16385 188 aa12.1□□□□□ -0.47
NUP54-217ENST00000514987 ZCCHC24Q8N2G6 241 aaKnown RBP12.1□□□□□ -0.47
NUP54-217ENST00000514987 SSMEM1Q8WWF3 244 aa12.1□□□□□ -0.47
NUP54-217ENST00000514987 UHRF2Q96PU4 802 aa12.1□□□□□ -0.47
NUP54-217ENST00000514987 SCNM1Q9BWG6 230 aa12.1□□□□□ -0.47
NUP54-217ENST00000514987 GAR1Q9NY12 217 aaKnown RBP12.1□□□□□ -0.47
NUP54-217ENST00000514987 PLCE1Q9P212 2302 aa12.1□□□□□ -0.47
NUP54-217ENST00000514987 DVL1O14640 695 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 GGCTO75223 188 aaKnown RBP12.09□□□□□ -0.47
NUP54-217ENST00000514987 NDUFB4O95168 129 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 FSTL3O95633 263 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 RNASE2P10153 161 aaKnown RBP12.09□□□□□ -0.47
NUP54-217ENST00000514987 DEFA4P12838 97 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 ATP5G3P48201 142 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 UCNP55089 124 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 FAM3BP58499 235 aaPredicted RBP12.09□□□□□ -0.47
NUP54-217ENST00000514987 UBE2G2P60604 165 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 LCN2P80188 198 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 LINC01551Q86U37 167 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 OR2T10Q8NGZ9 312 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 OR9G1Q8NH87 305 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 TNFRSF14Q92956 283 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 RNF2Q99496 336 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 NDUFA4L2Q9NRX3 87 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 TMEM167BQ9NRX6 74 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 WASHC3Q9Y3C0 194 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 FRYQ5TBA9 3013 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 IGHV1-69-2A0A0G2JMI3 117 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 DLL1O00548 723 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 TYMSP04818 313 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 LINC00869P0C866 280 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 AREGP15514 252 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 IGFBP2P18065 325 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 LOXP28300 417 aaPredicted RBP12.09□□□□□ -0.47
NUP54-217ENST00000514987 SUB1P53999 127 aaKnown RBP eCLIP12.09□□□□□ -0.47
NUP54-217ENST00000514987 FBXL19-AS1Q494R0 122 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 TMEM155Q4W5P6 130 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 SLC16A13Q7RTY0 426 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 MRPL41Q8IXM3 137 aaKnown RBP12.09□□□□□ -0.47
NUP54-217ENST00000514987 DMRTC2Q8IXT2 367 aaPredicted RBP12.09□□□□□ -0.47
NUP54-217ENST00000514987 FRZBQ92765 325 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 ST6GALNAC6Q969X2 333 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 NABP2Q9BQ15 211 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 PITPNC1Q9UKF7 332 aa12.09□□□□□ -0.47
NUP54-217ENST00000514987 YLPM1P49750 1951 aaKnown RBP12.08□□□□□ -0.48
NUP54-217ENST00000514987 PHOX2AO14813 284 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms