RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 COA4Q9NYJ1 87 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 TMED3Q9Y3Q3 217 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 FAM25EA8MYX2 175 aa11.74□□□□□ -0.53
NUP54-213ENST00000513352 TEX22C9J3V5 150 aa11.74□□□□□ -0.53
NUP54-213ENST00000513352 E7EUB6 86 aa11.74□□□□□ -0.53
NUP54-213ENST00000513352 CCSO14618 274 aa11.74□□□□□ -0.53
NUP54-213ENST00000513352 REG1AP05451 166 aa11.74□□□□□ -0.53
NUP54-213ENST00000513352 FGF2P09038 288 aa11.74□□□□□ -0.53
NUP54-213ENST00000513352 HOXA1P49639 335 aaPredicted RBP11.74□□□□□ -0.53
NUP54-213ENST00000513352 SRSF4Q08170 494 aaKnown RBP11.74□□□□□ -0.53
NUP54-213ENST00000513352 AKIRIN2Q53H80 203 aa11.74□□□□□ -0.53
NUP54-213ENST00000513352 HIST2H2BDQ6DRA6 164 aa11.74□□□□□ -0.53
NUP54-213ENST00000513352 TMEM65Q6PI78 240 aa11.74□□□□□ -0.53
NUP54-213ENST00000513352 Q6ZRM9 215 aa11.74□□□□□ -0.53
NUP54-213ENST00000513352 OR10W1Q8NGF6 305 aa11.74□□□□□ -0.53
NUP54-213ENST00000513352 ENY2Q9NPA8 101 aa11.74□□□□□ -0.53
NUP54-213ENST00000513352 ZNF580Q9UK33 172 aa11.74□□□□□ -0.53
NUP54-213ENST00000513352 COL6A5A8TX70 2615 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 A0A1B0GU03 582 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 C13orf42A0A1B0GVH6 325 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 A0A1B0GW64 132 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 CGB1A6NKQ9 187 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 CD28P10747 220 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 AREGP15514 252 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 HSPE1P61604 102 aaKnown RBP11.73□□□□□ -0.53
NUP54-213ENST00000513352 TATDN3Q17R31 274 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 CXorf66Q5JRM2 361 aaPredicted RBP11.73□□□□□ -0.53
NUP54-213ENST00000513352 ASPHD1Q5U4P2 390 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 TEX38Q6PEX7 206 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 LCNL1Q6ZST4 164 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 MRPL41Q8IXM3 137 aaKnown RBP11.73□□□□□ -0.53
NUP54-213ENST00000513352 COMMD1Q8N668 190 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 TMEM68Q96MH6 324 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 PLEKHA3Q9HB20 300 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 ZNF257Q9Y2Q1 563 aa11.73□□□□□ -0.53
NUP54-213ENST00000513352 A0A1W2PRX2 142 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 C5orf51A6NDU8 294 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 CEBPZOSA8MTT3 80 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 SNRPGP15A8MWD9 76 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 SSNA1O43805 119 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 OR13C7P0DN81 318 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 KRTAP10-3P60369 221 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 PRCDQ00LT1 54 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 CFHR3Q02985 330 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 KRTAP21-3Q3LHN1 58 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 C19orf54Q5BKX5 351 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 ZNF429Q86V71 674 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 MINDY2Q8NBR6 621 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 OR5M8Q8NGP6 311 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 FAM110DQ8TAY7 271 aaPredicted RBP11.72□□□□□ -0.53
NUP54-213ENST00000513352 MS4A10Q96PG2 267 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 NDUFA4L2Q9NRX3 87 aa11.72□□□□□ -0.53
NUP54-213ENST00000513352 TCRBV4S1A1TA0A5B7 111 aa11.71□□□□□ -0.53
NUP54-213ENST00000513352 IGLC7A0M8Q6 106 aa11.71□□□□□ -0.53
NUP54-213ENST00000513352 MPTX1A8MV57 137 aa11.71□□□□□ -0.53
NUP54-213ENST00000513352 SOX15O60248 233 aa11.71□□□□□ -0.53
NUP54-213ENST00000513352 IGHG4P01861 327 aa11.71□□□□□ -0.53
NUP54-213ENST00000513352 ELANEP08246 267 aa11.71□□□□□ -0.53
NUP54-213ENST00000513352 DEFA4P12838 97 aa11.71□□□□□ -0.53
NUP54-213ENST00000513352 PPIFP30405 207 aaKnown RBP11.71□□□□□ -0.53
NUP54-213ENST00000513352 SPCS3P61009 180 aa11.71□□□□□ -0.53
NUP54-213ENST00000513352 FOXE3Q13461 319 aa11.71□□□□□ -0.53
NUP54-213ENST00000513352 IAH1Q2TAA2 248 aaPredicted RBP11.71□□□□□ -0.53
NUP54-213ENST00000513352 C19orf35Q6ZS72 473 aa11.71□□□□□ -0.53
NUP54-213ENST00000513352 SRSF8Q9BRL6 282 aaKnown RBP11.71□□□□□ -0.53
NUP54-213ENST00000513352 ZNF747Q9BV97 191 aa11.71□□□□□ -0.53
NUP54-213ENST00000513352 GSKIPQ9P0R6 139 aa11.71□□□□□ -0.53
NUP54-213ENST00000513352 ALG5Q9Y673 324 aa11.71□□□□□ -0.53
NUP54-213ENST00000513352 NPIPB5A8MRT5 1133 aa11.7□□□□□ -0.54
NUP54-213ENST00000513352 GOSR2O14653 212 aa11.7□□□□□ -0.54
NUP54-213ENST00000513352 SCGB1D2O95969 90 aa11.7□□□□□ -0.54
NUP54-213ENST00000513352 PRH1P02810 166 aa11.7□□□□□ -0.54
NUP54-213ENST00000513352 TRGV3P03979 118 aa11.7□□□□□ -0.54
NUP54-213ENST00000513352 SLC25A6P12236 298 aa11.7□□□□□ -0.54
NUP54-213ENST00000513352 PSMB6P28072 239 aa11.7□□□□□ -0.54
NUP54-213ENST00000513352 TPPP2P59282 170 aa11.7□□□□□ -0.54
NUP54-213ENST00000513352 OXA1LQ15070 435 aa11.7□□□□□ -0.54
NUP54-213ENST00000513352 NSUN5P1Q3KNT7 163 aa11.7□□□□□ -0.54
NUP54-213ENST00000513352 HSD17B13Q7Z5P4 300 aaPredicted RBP11.7□□□□□ -0.54
NUP54-213ENST00000513352 TTC9CQ8N5M4 171 aa11.7□□□□□ -0.54
NUP54-213ENST00000513352 WIPF2Q8TF74 440 aaPredicted RBP11.7□□□□□ -0.54
NUP54-213ENST00000513352 CITED2Q99967 270 aaPredicted RBP11.7□□□□□ -0.54
NUP54-213ENST00000513352 CACFD1Q9UGQ2 172 aa11.7□□□□□ -0.54
NUP54-213ENST00000513352 NUDT19A8MXV4 375 aa11.69□□□□□ -0.54
NUP54-213ENST00000513352 IGLV1-40P01703 118 aa11.69□□□□□ -0.54
NUP54-213ENST00000513352 RPLP1P05386 114 aaKnown RBP11.69□□□□□ -0.54
NUP54-213ENST00000513352 PSMB8P28062 276 aa11.69□□□□□ -0.54
NUP54-213ENST00000513352 ERHP84090 104 aaKnown RBP11.69□□□□□ -0.54
NUP54-213ENST00000513352 DEFA5Q01523 94 aa11.69□□□□□ -0.54
NUP54-213ENST00000513352 WT1-ASQ06250 92 aa11.69□□□□□ -0.54
NUP54-213ENST00000513352 TNFRSF9Q07011 255 aa11.69□□□□□ -0.54
NUP54-213ENST00000513352 TCTEX1D4Q5JR98 221 aa11.69□□□□□ -0.54
NUP54-213ENST00000513352 SHISA2Q6UWI4 295 aa11.69□□□□□ -0.54
NUP54-213ENST00000513352 GSG1LQ6UXU4 331 aa11.69□□□□□ -0.54
NUP54-213ENST00000513352 OR52E5Q8NH55 327 aa11.69□□□□□ -0.54
NUP54-213ENST00000513352 OR10C1Q96KK4 312 aa11.69□□□□□ -0.54
NUP54-213ENST00000513352 KLK15Q9H2R5 256 aa11.69□□□□□ -0.54
NUP54-213ENST00000513352 HEYLQ9NQ87 328 aaPredicted RBP11.69□□□□□ -0.54
NUP54-213ENST00000513352 H3BUA1 57 aa11.68□□□□□ -0.54
NUP54-213ENST00000513352 WRBO00258 174 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms