RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 FAM90A26D6RGX4 464 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 KBTBD11O94819 623 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 CD24P25063 80 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 FXYD3Q14802 87 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 OR4X1Q8NH49 305 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 XKRY2A2RUG3 117 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 PPIHO43447 177 aaKnown RBP10.99□□□□□ -0.65
VPS54-203ENST00000409558 S100A8P05109 93 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 OR10A7Q8NGE5 316 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 OR10J1P30954 320 aa10.98□□□□□ -0.65
VPS54-203ENST00000409558 GAFA1Q96PS6 74 aa10.98□□□□□ -0.65
VPS54-203ENST00000409558 PIGBOS1A0A0B4J2F0 54 aa10.98□□□□□ -0.65
VPS54-203ENST00000409558 Q6ZS92 163 aa10.98□□□□□ -0.65
VPS54-203ENST00000409558 PRR7Q8TB68 274 aa10.98□□□□□ -0.65
VPS54-203ENST00000409558 GGTLC1Q9BX51 225 aa10.98□□□□□ -0.65
VPS54-203ENST00000409558 KLF2Q9Y5W3 355 aaPredicted RBP10.98□□□□□ -0.65
VPS54-203ENST00000409558 TRAV5A0A0B4J249 113 aa10.98□□□□□ -0.65
VPS54-203ENST00000409558 IL6RP08887 468 aaPredicted RBP10.98□□□□□ -0.65
VPS54-203ENST00000409558 GRNP28799 593 aaKnown RBP10.98□□□□□ -0.65
VPS54-203ENST00000409558 HTD2P86397 168 aa10.98□□□□□ -0.65
VPS54-203ENST00000409558 IGFL2Q6UWQ7 119 aa10.98□□□□□ -0.65
VPS54-203ENST00000409558 SGMS2Q8NHU3 365 aa10.98□□□□□ -0.65
VPS54-203ENST00000409558 ZCCHC14Q8WYQ9 949 aaKnown RBP10.98□□□□□ -0.65
VPS54-203ENST00000409558 COMMD5Q9GZQ3 224 aa10.98□□□□□ -0.65
VPS54-203ENST00000409558 CRYABP02511 175 aaKnown RBP10.98□□□□□ -0.65
VPS54-203ENST00000409558 GAMTQ14353 236 aa10.98□□□□□ -0.65
VPS54-203ENST00000409558 DPPA3Q6W0C5 159 aa10.98□□□□□ -0.65
VPS54-203ENST00000409558 SCNM1Q9BWG6 230 aa10.98□□□□□ -0.65
VPS54-203ENST00000409558 E7EUB6 86 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 HOXB1P14653 301 aaPredicted RBP10.97□□□□□ -0.65
VPS54-203ENST00000409558 ATP6V1FQ16864 119 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 PRR27Q6MZM9 219 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 PRSS33Q8NF86 280 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 S4R3C0 116 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 SLC25A17O43808 307 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 YPEL1O60688 119 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 MBP02144 154 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 FRMD6-AS1P0C7T7 363 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 SAA1P0DJI8 122 aaPredicted RBP10.97□□□□□ -0.65
VPS54-203ENST00000409558 HOXA5P20719 270 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 PACRGQ96M98 296 aaPredicted RBP10.97□□□□□ -0.65
VPS54-203ENST00000409558 YPEL2Q96QA6 119 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 SMDT1Q9H4I9 107 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 WDR83OSQ9Y284 106 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 A0A1B0GW64 132 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 F6UZH7 168 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 OR5G3P0C626 314 aa10.97□□□□□ -0.65
VPS54-203ENST00000409558 CDX1P47902 265 aaPredicted RBP10.97□□□□□ -0.65
VPS54-203ENST00000409558 YTHDF2Q9Y5A9 579 aaKnown RBP10.97□□□□□ -0.65
VPS54-203ENST00000409558 ZFYVE26Q68DK2 2539 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 CENPEQ02224 2701 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 OPRK1P41145 380 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 SUMO1P63165 101 aaKnown RBP10.96□□□□□ -0.65
VPS54-203ENST00000409558 EIF4EBP1Q13541 118 aaPredicted RBP10.96□□□□□ -0.65
VPS54-203ENST00000409558 ADIPOQQ15848 244 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 TEPPQ6URK8 271 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 IDI2-AS1Q9NZ38 188 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 TRAV1-1A0A0B4J248 108 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 MDFIC2A0A1B0GVS7 189 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 P0C879 139 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 SMIM6P0DI80 62 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 CRYBB3P26998 211 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 HSPE1P61604 102 aaKnown RBP10.96□□□□□ -0.65
VPS54-203ENST00000409558 RPP30P78346 268 aaKnown RBP10.96□□□□□ -0.65
VPS54-203ENST00000409558 SSBP2P81877 361 aaPredicted RBP10.96□□□□□ -0.65
VPS54-203ENST00000409558 KIAA1644Q3SXP7 199 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 FAM209BQ5JX69 171 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 MRPL41Q8IXM3 137 aaKnown RBP10.96□□□□□ -0.65
VPS54-203ENST00000409558 OR2T10Q8NGZ9 312 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 GSX1Q9H4S2 264 aaPredicted RBP10.96□□□□□ -0.65
VPS54-203ENST00000409558 TPSG1Q9NRR2 321 aa10.96□□□□□ -0.65
VPS54-203ENST00000409558 RBFOX2O43251 390 aaKnown RBP eCLIP10.96□□□□□ -0.66
VPS54-203ENST00000409558 CT45A6P0DMU7 189 aa10.96□□□□□ -0.66
VPS54-203ENST00000409558 CT45A5P0DMU8 189 aa10.96□□□□□ -0.66
VPS54-203ENST00000409558 CT45A7P0DMV0 189 aa10.96□□□□□ -0.66
VPS54-203ENST00000409558 PNRC1Q12796 327 aaPredicted RBP10.96□□□□□ -0.66
VPS54-203ENST00000409558 PMS2P11Q13670 270 aa10.96□□□□□ -0.66
VPS54-203ENST00000409558 CYP2G1PQ6ZSU1 146 aa10.96□□□□□ -0.66
VPS54-203ENST00000409558 LINC00479Q96M42 142 aa10.96□□□□□ -0.66
VPS54-203ENST00000409558 NPVFQ9HCQ7 196 aa10.96□□□□□ -0.66
VPS54-203ENST00000409558 CA1P00915 261 aaPredicted RBP10.95□□□□□ -0.66
VPS54-203ENST00000409558 FAM57AQ8TBR7 257 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 BLNKQ8WV28 456 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 SIRT7Q9NRC8 400 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 WNT2P09544 360 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 RTL8BQ17RB0 113 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 MISP3Q96FF7 219 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 RITA1Q96K30 269 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 hADV38S2A0JD32 116 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 ORM2P19652 201 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 GNB2P62879 340 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 EFNB3Q15768 340 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 ASCL5Q7RTU5 278 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 MALSU1Q96EH3 234 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 TRBV20OR9-2A0A075B6H5 130 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 TRAV34A0A0B4J273 112 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 NKX6-3A6NJ46 265 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 MOSP00540 346 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 CBLN1P23435 193 aa10.95□□□□□ -0.66
VPS54-203ENST00000409558 ZNF90Q03938 601 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 148.7 ms