RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 CLCF1Q9UBD9 225 aa13.48□□□□□ -0.25
SDC4-201ENST00000372733 NAT8BQ9UHF3 227 aa13.48□□□□□ -0.25
SDC4-201ENST00000372733 TMEM164Q5U3C3 297 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 VWA1Q6PCB0 445 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 PQLC2Q6ZP29 291 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 FAM214BQ7L5A3 538 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 MOB3BQ86TA1 216 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 ZNRF1Q8ND25 227 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 OR2Z1Q8NG97 314 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 DDB2Q92466 427 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 BRS3P32247 399 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 PRR20EP86478 221 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 PRR20CP86479 221 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 PRR20DP86480 221 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 PRR20BP86481 221 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 PRR20AP86496 221 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 OR4A47Q6IF82 309 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 SIGLECL1Q8N7X8 197 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 OR4S2Q8NH73 311 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 LY96Q9Y6Y9 160 aa13.47□□□□□ -0.25
SDC4-201ENST00000372733 LINC00869P0C866 280 aa13.46□□□□□ -0.25
SDC4-201ENST00000372733 Q8N976 141 aa13.46□□□□□ -0.25
SDC4-201ENST00000372733 RCHY1Q96PM5 261 aa13.46□□□□□ -0.25
SDC4-201ENST00000372733 SFXN3Q9BWM7 321 aa13.46□□□□□ -0.25
SDC4-201ENST00000372733 LPAR2Q9HBW0 351 aa13.46□□□□□ -0.25
SDC4-201ENST00000372733 TBL2Q9Y4P3 447 aaKnown RBP13.46□□□□□ -0.25
SDC4-201ENST00000372733 RAB31Q13636 194 aa13.46□□□□□ -0.25
SDC4-201ENST00000372733 MRPL52Q86TS9 123 aaKnown RBP13.46□□□□□ -0.25
SDC4-201ENST00000372733 GNB1LQ9BYB4 327 aa13.46□□□□□ -0.25
SDC4-201ENST00000372733 GOLT1BQ9Y3E0 138 aa13.46□□□□□ -0.25
SDC4-201ENST00000372733 HELTA6NFD8 242 aa13.45□□□□□ -0.26
SDC4-201ENST00000372733 PMCHP20382 165 aa13.45□□□□□ -0.26
SDC4-201ENST00000372733 SPRNQ5BIV9 151 aa13.45□□□□□ -0.26
SDC4-201ENST00000372733 ENY2Q9NPA8 101 aa13.45□□□□□ -0.26
SDC4-201ENST00000372733 ZNF586Q9NXT0 402 aa13.45□□□□□ -0.26
SDC4-201ENST00000372733 CALYQ9NYX4 217 aa13.45□□□□□ -0.26
SDC4-201ENST00000372733 MGST3O14880 152 aa13.45□□□□□ -0.26
SDC4-201ENST00000372733 GPX1P07203 203 aa13.45□□□□□ -0.26
SDC4-201ENST00000372733 AREGP15514 252 aa13.45□□□□□ -0.26
SDC4-201ENST00000372733 GATA2P23769 480 aaPredicted RBP13.45□□□□□ -0.26
SDC4-201ENST00000372733 HSPE1P61604 102 aaKnown RBP13.45□□□□□ -0.26
SDC4-201ENST00000372733 FER1L6-AS2Q96M78 137 aa13.45□□□□□ -0.26
SDC4-201ENST00000372733 TMEM14BQ9NUH8 114 aa13.45□□□□□ -0.26
SDC4-201ENST00000372733 IDI2-AS1Q9NZ38 188 aa13.45□□□□□ -0.26
SDC4-201ENST00000372733 FOXA2Q9Y261 457 aaPredicted RBP13.45□□□□□ -0.26
SDC4-201ENST00000372733 SAA2-SAA4A0A096LPE2 208 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 TRBV9A0A0B4J1U6 114 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 SRRM5B3KS81 715 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 DIRC3C9JPN6 131 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 F2RL2O00254 374 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 SAA2P0DJI9 122 aaPredicted RBP13.44□□□□□ -0.26
SDC4-201ENST00000372733 TFPI2P48307 235 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 AMTP48728 403 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 TMEM136Q6ZRR5 245 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 C1orf210Q8IVY1 113 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 ZNF503Q96F45 646 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 NABP2Q9BQ15 211 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 NCOR1O75376 2440 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 IGHV2OR16-5A0A0B4J2B6 119 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 GGTLC3B5MD39 225 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 OR7C2O60412 319 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 OR10J4P0C629 311 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 KIR2DS2P43631 304 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 CX3CL1P78423 397 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 MSMPQ1L6U9 139 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 ASPHD1Q5U4P2 390 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 MRPL54Q6P161 138 aaKnown RBP13.44□□□□□ -0.26
SDC4-201ENST00000372733 LOC400499M0QZD8 3231 aa13.44□□□□□ -0.26
SDC4-201ENST00000372733 CT45A1Q5HYN5 189 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 GCSAMQ8N6F7 178 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 CT45A3Q8NHU0 189 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 NEUROG1Q92886 237 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 NRN1Q9NPD7 142 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 SLC45A2Q9UMX9 530 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 TECTAO75443 2155 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 IGKV1OR2-108A0A075B7D4 117 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 KIR2DL2P43627 348 aaPredicted RBP13.43□□□□□ -0.26
SDC4-201ENST00000372733 GUSBP1Q15486 140 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 ALKBH2Q6NS38 261 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 C9orf106Q8NAJ2 232 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 KCNS1Q96KK3 526 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 ARRDC1-AS1Q9H2J1 176 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 GCM1Q9NP62 436 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 IL19Q9UHD0 177 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 IGHV1-18A0A0C4DH31 117 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 FAM201AQ5SY85 155 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 TMEM178AQ8NBL3 297 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 OR4B1Q8NGF8 309 aa13.43□□□□□ -0.26
SDC4-201ENST00000372733 SLC25A10Q9UBX3 287 aaPredicted RBP13.43□□□□□ -0.26
SDC4-201ENST00000372733 MGST1P10620 155 aaKnown RBP13.42□□□□□ -0.26
SDC4-201ENST00000372733 SRIP30626 198 aa13.42□□□□□ -0.26
SDC4-201ENST00000372733 TIGITQ495A1 244 aa13.42□□□□□ -0.26
SDC4-201ENST00000372733 PRO3102Q9H379 93 aa13.42□□□□□ -0.26
SDC4-201ENST00000372733 TMEM167BQ9NRX6 74 aa13.42□□□□□ -0.26
SDC4-201ENST00000372733 OR51B2Q9Y5P1 312 aa13.42□□□□□ -0.26
SDC4-201ENST00000372733 SPENQ96T58 3664 aaKnown RBP13.42□□□□□ -0.26
SDC4-201ENST00000372733 A0A1W2PS18 150 aa13.42□□□□□ -0.26
SDC4-201ENST00000372733 CA1P00915 261 aaPredicted RBP13.42□□□□□ -0.26
SDC4-201ENST00000372733 MT-ND6P03923 174 aa13.42□□□□□ -0.26
SDC4-201ENST00000372733 C17orf58Q2M2W7 97 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms