RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 WFDC8Q8IUA0 241 aa17.5■□□□□ 0.39
TRIM28-201ENST00000253024 SFRP2Q96HF1 295 aa17.5■□□□□ 0.39
TRIM28-201ENST00000253024 SGK494Q96LW2 274 aa17.5■□□□□ 0.39
TRIM28-201ENST00000253024 PARD6GQ9BYG4 376 aaPredicted RBP17.5■□□□□ 0.39
TRIM28-201ENST00000253024 JPT1Q9UK76 154 aa17.5■□□□□ 0.39
TRIM28-201ENST00000253024 DIAPH2-AS1Q14236 149 aa17.49■□□□□ 0.39
TRIM28-201ENST00000253024 KIAA1644Q3SXP7 199 aa17.49■□□□□ 0.39
TRIM28-201ENST00000253024 MBNL2Q5VZF2 373 aaKnown RBP17.49■□□□□ 0.39
TRIM28-201ENST00000253024 KCNIP4Q6PIL6 250 aa17.49■□□□□ 0.39
TRIM28-201ENST00000253024 ACY3Q96HD9 319 aa17.49■□□□□ 0.39
TRIM28-201ENST00000253024 F2Z2F3 143 aa17.49■□□□□ 0.39
TRIM28-201ENST00000253024 PLAUP00749 431 aa17.49■□□□□ 0.39
TRIM28-201ENST00000253024 C10orf55Q5SWW7 151 aa17.49■□□□□ 0.39
TRIM28-201ENST00000253024 PPP1R35Q8TAP8 253 aa17.49■□□□□ 0.39
TRIM28-201ENST00000253024 FAM215AQ9Y5M1 114 aa17.49■□□□□ 0.39
TRIM28-201ENST00000253024 LGALS4P56470 323 aa17.49■□□□□ 0.39
TRIM28-201ENST00000253024 ZNF90Q03938 601 aa17.49■□□□□ 0.39
TRIM28-201ENST00000253024 VWC2Q2TAL6 325 aa17.49■□□□□ 0.39
TRIM28-201ENST00000253024 H1FXQ92522 213 aaKnown RBP17.49■□□□□ 0.39
TRIM28-201ENST00000253024 OR51B2Q9Y5P1 312 aa17.49■□□□□ 0.39
TRIM28-201ENST00000253024 COL6A6A6NMZ7 2263 aa17.48■□□□□ 0.39
TRIM28-201ENST00000253024 IGHV3-21A0A0B4J1V1 117 aa17.48■□□□□ 0.39
TRIM28-201ENST00000253024 OR4S2Q8NH73 311 aa17.48■□□□□ 0.39
TRIM28-201ENST00000253024 OR9G1Q8NH87 305 aa17.48■□□□□ 0.39
TRIM28-201ENST00000253024 J3QR06 171 aa17.48■□□□□ 0.39
TRIM28-201ENST00000253024 K7EN84 100 aa17.48■□□□□ 0.39
TRIM28-201ENST00000253024 CRYBB3P26998 211 aa17.48■□□□□ 0.39
TRIM28-201ENST00000253024 ADMP35318 185 aa17.48■□□□□ 0.39
TRIM28-201ENST00000253024 CNN1P51911 297 aaKnown RBP17.48■□□□□ 0.39
TRIM28-201ENST00000253024 SPTAN1Q13813 2472 aaKnown RBP17.48■□□□□ 0.39
TRIM28-201ENST00000253024 TRGV10A0A0A0MS01 117 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 IGHV3-72A0A0B4J1Y9 119 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 YPEL1O60688 119 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 REG1AP05451 166 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 GCHFRP30047 84 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 TEPPQ6URK8 271 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 ZADH2Q8N4Q0 377 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 ANAPC16Q96DE5 110 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 YPEL2Q96QA6 119 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 NPVFQ9HCQ7 196 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 IDI2-AS1Q9NZ38 188 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 TRAV5A0A0B4J249 113 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 CA1P00915 261 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-201ENST00000253024 CHRNB4P30926 498 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 ACTL10Q5JWF8 245 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 C19orf35Q6ZS72 473 aa17.47■□□□□ 0.39
TRIM28-201ENST00000253024 RNASE7Q9H1E1 156 aaKnown RBP17.47■□□□□ 0.39
TRIM28-201ENST00000253024 DYSFO75923 2080 aa17.46■□□□□ 0.39
TRIM28-201ENST00000253024 DMRTC2Q8IXT2 367 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-201ENST00000253024 ZCCHC14Q8WYQ9 949 aaKnown RBP17.46■□□□□ 0.39
TRIM28-201ENST00000253024 LINC00479Q96M42 142 aa17.46■□□□□ 0.39
TRIM28-201ENST00000253024 ATG101Q9BSB4 218 aa17.46■□□□□ 0.39
TRIM28-201ENST00000253024 IGKV1OR2-108A0A075B7D4 117 aa17.46■□□□□ 0.39
TRIM28-201ENST00000253024 STAG3L2P0CL84 134 aa17.46■□□□□ 0.39
TRIM28-201ENST00000253024 STAG3L3P0CL85 134 aa17.46■□□□□ 0.39
TRIM28-201ENST00000253024 RAB4BP61018 213 aa17.46■□□□□ 0.39
TRIM28-201ENST00000253024 LOXL4Q96JB6 756 aa17.46■□□□□ 0.39
TRIM28-201ENST00000253024 PYGO2Q9BRQ0 406 aa17.46■□□□□ 0.39
TRIM28-201ENST00000253024 IGF2RP11717 2491 aa17.46■□□□□ 0.39
TRIM28-201ENST00000253024 C15orf61A6NNL5 157 aa17.46■□□□□ 0.38
TRIM28-201ENST00000253024 IGHV1-46P01743 117 aa17.46■□□□□ 0.38
TRIM28-201ENST00000253024 IER3P46695 156 aa17.46■□□□□ 0.38
TRIM28-201ENST00000253024 ERVFC1-1P60608 527 aa17.46■□□□□ 0.38
TRIM28-201ENST00000253024 OR2T6Q8NHC8 308 aa17.46■□□□□ 0.38
TRIM28-201ENST00000253024 CCL17Q92583 94 aa17.46■□□□□ 0.38
TRIM28-201ENST00000253024 UHRF2Q96PU4 802 aa17.46■□□□□ 0.38
TRIM28-201ENST00000253024 ZNF705FA8MVS1 300 aaPredicted RBP17.45■□□□□ 0.38
TRIM28-201ENST00000253024 E7EUB6 86 aa17.45■□□□□ 0.38
TRIM28-201ENST00000253024 PDE6DO43924 150 aa17.45■□□□□ 0.38
TRIM28-201ENST00000253024 ZNF705DP0CH99 300 aaPredicted RBP17.45■□□□□ 0.38
TRIM28-201ENST00000253024 ZNF705BP0CI00 300 aaPredicted RBP17.45■□□□□ 0.38
TRIM28-201ENST00000253024 MGST1P10620 155 aaKnown RBP17.45■□□□□ 0.38
TRIM28-201ENST00000253024 OR10J1P30954 320 aa17.45■□□□□ 0.38
TRIM28-201ENST00000253024 OPRK1P41145 380 aa17.45■□□□□ 0.38
TRIM28-201ENST00000253024 SSBP2P81877 361 aaPredicted RBP17.45■□□□□ 0.38
TRIM28-201ENST00000253024 MISP3Q96FF7 219 aa17.45■□□□□ 0.38
TRIM28-201ENST00000253024 FAM103A1Q9BTL3 118 aaKnown RBP17.45■□□□□ 0.38
TRIM28-201ENST00000253024 KBTBD11-OT1A0A1B0GTJ5 212 aa17.45■□□□□ 0.38
TRIM28-201ENST00000253024 CXorf1O96002 111 aa17.45■□□□□ 0.38
TRIM28-201ENST00000253024 PKIAP61925 76 aa17.45■□□□□ 0.38
TRIM28-201ENST00000253024 RPP30P78346 268 aaKnown RBP17.45■□□□□ 0.38
TRIM28-201ENST00000253024 JOSD1Q15040 202 aaPredicted RBP17.45■□□□□ 0.38
TRIM28-201ENST00000253024 MORN5Q5VZ52 161 aa17.45■□□□□ 0.38
TRIM28-201ENST00000253024 OR10G8Q8NGN5 311 aa17.45■□□□□ 0.38
TRIM28-201ENST00000253024 SLC35D1Q9NTN3 355 aa17.45■□□□□ 0.38
TRIM28-201ENST00000253024 SERTAD4Q9NUC0 356 aa17.45■□□□□ 0.38
TRIM28-201ENST00000253024 SPTBN1Q01082 2364 aaKnown RBP17.44■□□□□ 0.38
TRIM28-201ENST00000253024 MALRD1Q5VYJ5 2156 aa17.44■□□□□ 0.38
TRIM28-201ENST00000253024 PRSS46E5RG02 174 aa17.44■□□□□ 0.38
TRIM28-201ENST00000253024 GGCTO75223 188 aaKnown RBP17.44■□□□□ 0.38
TRIM28-201ENST00000253024 KCNIP2Q9NS61 270 aa17.44■□□□□ 0.38
TRIM28-201ENST00000253024 RYDENQ9NUL5 291 aaKnown RBP17.44■□□□□ 0.38
TRIM28-201ENST00000253024 RNF7Q9UBF6 113 aa17.44■□□□□ 0.38
TRIM28-201ENST00000253024 HSPE1P61604 102 aaKnown RBP17.44■□□□□ 0.38
TRIM28-201ENST00000253024 PQLC2Q6ZP29 291 aa17.44■□□□□ 0.38
TRIM28-201ENST00000253024 C1orf162Q8NEQ5 155 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-201ENST00000253024 PLEKHA3Q9HB20 300 aa17.44■□□□□ 0.38
TRIM28-201ENST00000253024 RAI1Q7Z5J4 1906 aaPredicted RBP17.43■□□□□ 0.38
TRIM28-201ENST00000253024 SSX2Q16385 188 aa17.43■□□□□ 0.38
TRIM28-201ENST00000253024 OR8I2Q8N0Y5 310 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms