RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 ZNF324O75467 553 aaPredicted RBP13.73□□□□□ -0.21
PCDHA3-201ENST00000522353 PEMTQ9UBM1 199 aa13.73□□□□□ -0.21
PCDHA3-201ENST00000522353 C1QL1O75973 258 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 GCGP01275 180 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 TMEM187Q14656 261 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 LINC00114Q6XXX2 140 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 OR13A1Q8NGR1 328 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 DIRC3C9JPN6 131 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 PLAURQ03405 335 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 SMUG1Q53HV7 270 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 LAIR2Q6ISS4 152 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 PIKFYVEQ9Y2I7 2098 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 CELA3BP08861 270 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 SAMD13Q5VXD3 122 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 SPSB4Q96A44 273 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 TMEM177Q53S58 311 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 OR4A47Q6IF82 309 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 FLVCR1-AS1Q8TAF5 88 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 TBX15Q96SF7 602 aa13.72□□□□□ -0.21
PCDHA3-201ENST00000522353 SPTAN1Q13813 2472 aaKnown RBP13.71□□□□□ -0.21
PCDHA3-201ENST00000522353 LOC389332A0A1B0GUA5 103 aa13.71□□□□□ -0.21
PCDHA3-201ENST00000522353 BTF3P20290 206 aaKnown RBP13.71□□□□□ -0.21
PCDHA3-201ENST00000522353 HERPUD1Q15011 391 aa13.71□□□□□ -0.21
PCDHA3-201ENST00000522353 C2orf83Q53S99 150 aa13.71□□□□□ -0.21
PCDHA3-201ENST00000522353 VN1R17PQ8TDU5 208 aa13.71□□□□□ -0.21
PCDHA3-201ENST00000522353 ZNF837Q96EG3 531 aaPredicted RBP13.71□□□□□ -0.21
PCDHA3-201ENST00000522353 DPH3Q96FX2 82 aa13.71□□□□□ -0.21
PCDHA3-201ENST00000522353 GPR179Q6PRD1 2367 aa13.71□□□□□ -0.21
PCDHA3-201ENST00000522353 ZNF502Q8TBZ5 544 aa13.71□□□□□ -0.21
PCDHA3-201ENST00000522353 CA2P00918 260 aa13.71□□□□□ -0.22
PCDHA3-201ENST00000522353 CA7P43166 264 aa13.71□□□□□ -0.22
PCDHA3-201ENST00000522353 COL25A1Q9BXS0 654 aaPredicted RBP13.71□□□□□ -0.22
PCDHA3-201ENST00000522353 ABCA4P78363 2273 aa13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 MYOD1P15172 320 aa13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 RPL24P83731 157 aaKnown RBP13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 MRPL13Q9BYD1 178 aaKnown RBP13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 IFI27L2Q9H2X8 130 aa13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 SPRR3Q9UBC9 169 aa13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 LOC285556D6RIA3 1793 aa13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 IGHV3OR16-13A0A075B7E8 117 aa13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 IGHV3-74A0A0B4J1X5 117 aa13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 C20orf204Q6ZNR8 217 aa13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 C17orf82Q86X59 251 aaPredicted RBP13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 GPR82Q96P67 336 aa13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 ZMAT5Q9UDW3 170 aaKnown RBP13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 ARL14EPLP0DKL9 152 aa13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 FAM209BQ5JX69 171 aa13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 PAPPA-AS1Q5QFB9 102 aa13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 CYP2G1PQ6ZSU1 146 aa13.7□□□□□ -0.22
PCDHA3-201ENST00000522353 ERVH48-1M5A8F1 160 aa13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 IGKV3-20P01619 116 aa13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 IGHV3-48P01763 117 aa13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 C1QL2Q7Z5L3 287 aa13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 SRSF12Q8WXF0 261 aaKnown RBP13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 WBP1Q96G27 269 aa13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 PAM16Q9Y3D7 125 aa13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 H0YL77 283 aa13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 CEACAM4O75871 244 aa13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 TCF24Q7RTU0 167 aa13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 GGACTQ9BVM4 153 aa13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 MAP1LC3AQ9H492 121 aa13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 PSMG3Q9BT73 122 aaPredicted RBP13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 VDAC2P45880 294 aaPredicted RBP13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 PKIAP61925 76 aa13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 ZNF56Q15929 161 aa13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 COLCA1Q6ZS62 124 aa13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 ITLN2Q8WWU7 325 aaPredicted RBP13.69□□□□□ -0.22
PCDHA3-201ENST00000522353 NBASA2RRP1 2371 aa13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 GPR183P32249 361 aa13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 GOLT1AQ6ZVE7 132 aa13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 MRPL20Q9BYC9 149 aaKnown RBP13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 SH3BGRL3Q9H299 93 aa13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 MDC1Q14676 2089 aaKnown RBP13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 NBR2O15453 112 aa13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 ZNF207O43670 478 aaKnown RBP13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 MARVELD3Q96A59 401 aa13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 PLSCR2Q9NRY7 297 aa13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 PQLC2LA1A4F0 135 aa13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 F12P00748 615 aaPredicted RBP13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 LINC00305Q7Z4B0 112 aa13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 KIR2DL4Q99706 377 aa13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 TMEM238LA0A1B0GVL6 79 aa13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 A6NJY4 79 aa13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 FAM74A4Q5TZK3 123 aa13.68□□□□□ -0.22
PCDHA3-201ENST00000522353 OR4C46A6NHA9 309 aa13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 H7C1H1 209 aa13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 TMEM133Q9H2Q1 129 aa13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 MSRB2Q9Y3D2 182 aa13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 SCN2AQ99250 2005 aa13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 A0A0G2JK05 382 aa13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 FOXI3A8MTJ6 420 aaPredicted RBP13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 H2BFSP57053 126 aa13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 RND3P61587 244 aa13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 ZNF383Q8NA42 475 aa13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 TP53RKQ96S44 253 aa13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 TMEM8BA6NDV4 472 aa13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 CRYBB3P26998 211 aa13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 NMUP48645 174 aa13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 CD69Q07108 199 aa13.67□□□□□ -0.22
PCDHA3-201ENST00000522353 FOXA2Q9Y261 457 aaPredicted RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms