RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 UXS1Q8NBZ7 420 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 CHPT1Q8WUD6 406 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 SRSF12Q8WXF0 261 aaKnown RBP11.8□□□□□ -0.52
NUP54-213ENST00000513352 TMEM56Q96MV1 263 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 FYTTD1Q96QD9 318 aaKnown RBP11.8□□□□□ -0.52
NUP54-213ENST00000513352 HINT2Q9BX68 163 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 COMMD5Q9GZQ3 224 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 PRNDQ9UKY0 176 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 FBXO7Q9Y3I1 522 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 MMP24Q9Y5R2 645 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 TMEM56-RWDD3S4R434 201 aa11.8□□□□□ -0.52
NUP54-213ENST00000513352 TRAV41A0A0B4J266 112 aa11.79□□□□□ -0.52
NUP54-213ENST00000513352 PIGBOS1A0A0B4J2F0 54 aa11.79□□□□□ -0.52
NUP54-213ENST00000513352 A0A0G2JRQ6 117 aa11.79□□□□□ -0.52
NUP54-213ENST00000513352 PSMB11A5LHX3 300 aa11.79□□□□□ -0.52
NUP54-213ENST00000513352 DUS4LO95620 317 aaKnown RBP11.79□□□□□ -0.52
NUP54-213ENST00000513352 HOXB5P09067 269 aa11.79□□□□□ -0.52
NUP54-213ENST00000513352 SLC35B1P78383 322 aa11.79□□□□□ -0.52
NUP54-213ENST00000513352 LYZL2Q7Z4W2 148 aa11.79□□□□□ -0.52
NUP54-213ENST00000513352 FAM219AQ8IW50 185 aa11.79□□□□□ -0.52
NUP54-213ENST00000513352 ALX4Q9H161 411 aaPredicted RBP11.79□□□□□ -0.52
NUP54-213ENST00000513352 GPN1Q9HCN4 374 aaPredicted RBP11.79□□□□□ -0.52
NUP54-213ENST00000513352 OR51B2Q9Y5P1 312 aa11.79□□□□□ -0.52
NUP54-213ENST00000513352 TET2Q6N021 2002 aaPredicted RBP11.79□□□□□ -0.52
NUP54-213ENST00000513352 FBN1P35555 2871 aaKnown RBP11.78□□□□□ -0.52
NUP54-213ENST00000513352 A0A0B4J2A0 478 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 MSGN1A6NI15 193 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 C15orf61A6NNL5 157 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 G3V318 75 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 DHFRP00374 187 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 IGF1P05019 195 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 PROK1P58294 105 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 SSBP2P81877 361 aaPredicted RBP11.78□□□□□ -0.52
NUP54-213ENST00000513352 TMEM267Q0VDI3 215 aaPredicted RBP11.78□□□□□ -0.52
NUP54-213ENST00000513352 ZNF329Q86UD4 541 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 LFNGQ8NES3 379 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 SGMS2Q8NHU3 365 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 ZNF431Q8TF32 576 aaPredicted RBP11.78□□□□□ -0.52
NUP54-213ENST00000513352 GPR146Q96CH1 333 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 MDFIQ99750 246 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 SPIN2AQ99865 258 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 SPIN2BQ9BPZ2 258 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 PDCD10Q9BUL8 212 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 GON7Q9BXV9 100 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 FKBP11Q9NYL4 201 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 CACNG5Q9UF02 275 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 SHPKQ9UHJ6 478 aa11.78□□□□□ -0.52
NUP54-213ENST00000513352 A0A1W2PN81 502 aa11.77□□□□□ -0.53
NUP54-213ENST00000513352 DUXBA0A1W2PPF3 345 aa11.77□□□□□ -0.53
NUP54-213ENST00000513352 HMX3A6NHT5 357 aa11.77□□□□□ -0.53
NUP54-213ENST00000513352 IL6RP08887 468 aaPredicted RBP11.77□□□□□ -0.53
NUP54-213ENST00000513352 EGR2P11161 476 aaPredicted RBP11.77□□□□□ -0.53
NUP54-213ENST00000513352 CHRNA7P36544 502 aa11.77□□□□□ -0.53
NUP54-213ENST00000513352 MECP2P51608 486 aaKnown RBP11.77□□□□□ -0.53
NUP54-213ENST00000513352 THOC7Q6I9Y2 204 aaKnown RBP11.77□□□□□ -0.53
NUP54-213ENST00000513352 C3orf56Q8N813 242 aa11.77□□□□□ -0.53
NUP54-213ENST00000513352 C11orf44Q8N8P7 122 aa11.77□□□□□ -0.53
NUP54-213ENST00000513352 OR1L8Q8NGR8 309 aa11.77□□□□□ -0.53
NUP54-213ENST00000513352 LSM10Q969L4 123 aaKnown RBP11.77□□□□□ -0.53
NUP54-213ENST00000513352 MARVELD1Q9BSK0 173 aa11.77□□□□□ -0.53
NUP54-213ENST00000513352 QTRT1Q9BXR0 403 aaKnown RBP11.77□□□□□ -0.53
NUP54-213ENST00000513352 WNT10AQ9GZT5 417 aa11.77□□□□□ -0.53
NUP54-213ENST00000513352 PRAF2O60831 178 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 NXPH3O95157 252 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 IFNA21P01568 189 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 IFNA17P01571 189 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 IL5P05113 134 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 P0C879 139 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 SULT1A3P0DMM9 295 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 SULT1A4P0DMN0 295 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 SPINK9Q5DT21 86 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 KHDC1LQ5JSQ8 128 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 C10orf99Q6UWK7 81 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 CADM3Q8N126 398 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 C12orf45Q8N5I9 185 aaPredicted RBP11.76□□□□□ -0.53
NUP54-213ENST00000513352 LRTM2Q8N967 370 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 OR5T1Q8NG75 326 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 OR5AU1Q8NGC0 362 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 OR4X2Q8NGF9 303 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 MITD1Q8WV92 249 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 WFDC12Q8WWY7 111 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 ZNF355PQ9NSJ1 428 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 TMEM14BQ9NUH8 114 aa11.76□□□□□ -0.53
NUP54-213ENST00000513352 FOXA2Q9Y261 457 aaPredicted RBP11.76□□□□□ -0.53
NUP54-213ENST00000513352 A0A0B4J293 547 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 TEX50A0A1B0GTY4 177 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 DBX1A6NMT0 343 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 ST8SIA3O43173 380 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 FBXO24O75426 580 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 ADAP1O75689 374 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 TRAPPC2P0DI81 140 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 TRAPPC2BP0DI82 140 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 PF4V1P10720 104 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 CRIP2P52943 208 aaPredicted RBP11.75□□□□□ -0.53
NUP54-213ENST00000513352 SMCO1Q147U7 214 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 NMSQ5H8A3 153 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 GGNBP1Q5YKI7 109 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 OR5B3Q8NH48 314 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 OR1S1Q8NH92 325 aa11.75□□□□□ -0.53
NUP54-213ENST00000513352 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms