RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SPOPLQ6IQ16 392 aa3.38□□□□□ -1.87
NUP54-215ENST00000514313 SLC35F6Q8N357 371 aa3.38□□□□□ -1.87
NUP54-215ENST00000514313 LRRC25Q8N386 305 aaPredicted RBP3.38□□□□□ -1.87
NUP54-215ENST00000514313 KNCNA6PVL3 124 aa3.37□□□□□ -1.87
NUP54-215ENST00000514313 ATP5HO75947 161 aa3.37□□□□□ -1.87
NUP54-215ENST00000514313 NSA2O95478 260 aaKnown RBP3.37□□□□□ -1.87
NUP54-215ENST00000514313 CCR2P41597 374 aa3.37□□□□□ -1.87
NUP54-215ENST00000514313 POLR2GP62487 172 aaKnown RBP eCLIP3.37□□□□□ -1.87
NUP54-215ENST00000514313 CTAG1AP78358 180 aa3.37□□□□□ -1.87
NUP54-215ENST00000514313 CCL7P80098 99 aa3.37□□□□□ -1.87
NUP54-215ENST00000514313 SRSF6Q13247 344 aaKnown RBP3.37□□□□□ -1.87
NUP54-215ENST00000514313 GUK1Q16774 197 aa3.37□□□□□ -1.87
NUP54-215ENST00000514313 ZNF767PQ75MW2 155 aa3.37□□□□□ -1.87
NUP54-215ENST00000514313 SSX8Q7RTT4 187 aa3.37□□□□□ -1.87
NUP54-215ENST00000514313 OR4X1Q8NH49 305 aa3.37□□□□□ -1.87
NUP54-215ENST00000514313 ROPN1LQ96C74 230 aa3.37□□□□□ -1.87
NUP54-215ENST00000514313 OR52E6Q96RD3 313 aa3.37□□□□□ -1.87
NUP54-215ENST00000514313 SMIM9A6NGZ8 99 aa3.36□□□□□ -1.87
NUP54-215ENST00000514313 I3L521 148 aa3.36□□□□□ -1.87
NUP54-215ENST00000514313 J3QRE1 110 aa3.36□□□□□ -1.87
NUP54-215ENST00000514313 BHLHE40O14503 412 aa3.36□□□□□ -1.87
NUP54-215ENST00000514313 HOXA6P31267 233 aa3.36□□□□□ -1.87
NUP54-215ENST00000514313 RAB13P51153 203 aa3.36□□□□□ -1.87
NUP54-215ENST00000514313 SS18Q15532 418 aa3.36□□□□□ -1.87
NUP54-215ENST00000514313 MIAQ16674 131 aa3.36□□□□□ -1.87
NUP54-215ENST00000514313 AGTRAPQ6RW13 159 aa3.36□□□□□ -1.87
NUP54-215ENST00000514313 TBC1D19Q8N5T2 526 aa3.36□□□□□ -1.87
NUP54-215ENST00000514313 PAQR5Q9NXK6 330 aaPredicted RBP3.36□□□□□ -1.87
NUP54-215ENST00000514313 RBM7Q9Y580 266 aaKnown RBP3.36□□□□□ -1.87
NUP54-215ENST00000514313 MYO16Q9Y6X6 1858 aa3.35□□□□□ -1.87
NUP54-215ENST00000514313 TRGV5A0A0B4J1U4 118 aa3.35□□□□□ -1.87
NUP54-215ENST00000514313 FNDC10F2Z333 226 aa3.35□□□□□ -1.87
NUP54-215ENST00000514313 BPGMP07738 259 aa3.35□□□□□ -1.87
NUP54-215ENST00000514313 HIST1H1TP22492 207 aaPredicted RBP3.35□□□□□ -1.87
NUP54-215ENST00000514313 ERVS71-1P61550 626 aa3.35□□□□□ -1.87
NUP54-215ENST00000514313 LHFPL1Q86WI0 220 aa3.35□□□□□ -1.87
NUP54-215ENST00000514313 CHMP6Q96FZ7 201 aa3.35□□□□□ -1.87
NUP54-215ENST00000514313 ERMAPQ96PL5 475 aaPredicted RBP3.35□□□□□ -1.87
NUP54-215ENST00000514313 COL5A1P20908 1838 aaPredicted RBP3.35□□□□□ -1.87
NUP54-215ENST00000514313 GRIN2BQ13224 1484 aa3.35□□□□□ -1.87
NUP54-215ENST00000514313 A0A087WUJ7 227 aa3.34□□□□□ -1.87
NUP54-215ENST00000514313 PSMD12O00232 456 aaPredicted RBP3.34□□□□□ -1.87
NUP54-215ENST00000514313 SRP19P09132 144 aaKnown RBP3.34□□□□□ -1.87
NUP54-215ENST00000514313 TFPTP0C1Z6 253 aa3.34□□□□□ -1.87
NUP54-215ENST00000514313 ZNF705DP0CH99 300 aaPredicted RBP3.34□□□□□ -1.87
NUP54-215ENST00000514313 OR4D2P58180 307 aa3.34□□□□□ -1.87
NUP54-215ENST00000514313 PSME3P61289 254 aa3.34□□□□□ -1.87
NUP54-215ENST00000514313 REEP5Q00765 189 aa3.34□□□□□ -1.87
NUP54-215ENST00000514313 HES1Q14469 280 aa3.34□□□□□ -1.87
NUP54-215ENST00000514313 DCUN1D1Q96GG9 259 aa3.34□□□□□ -1.87
NUP54-215ENST00000514313 Q9BRP9 147 aa3.34□□□□□ -1.87
NUP54-215ENST00000514313 SLIT2O94813 1529 aa3.34□□□□□ -1.88
NUP54-215ENST00000514313 TRGV4A0A0C4DH28 118 aa3.33□□□□□ -1.88
NUP54-215ENST00000514313 C2orf74A8MZ97 194 aa3.33□□□□□ -1.88
NUP54-215ENST00000514313 IFNA6P05013 189 aa3.33□□□□□ -1.88
NUP54-215ENST00000514313 UCHL1P09936 223 aa3.33□□□□□ -1.88
NUP54-215ENST00000514313 CSRP1P21291 193 aaKnown RBP3.33□□□□□ -1.88
NUP54-215ENST00000514313 S100A7P31151 101 aa3.33□□□□□ -1.88
NUP54-215ENST00000514313 CA5AP35218 305 aa3.33□□□□□ -1.88
NUP54-215ENST00000514313 CSN1S1P47710 185 aa3.33□□□□□ -1.88
NUP54-215ENST00000514313 KRTAP10-1P60331 282 aa3.33□□□□□ -1.88
NUP54-215ENST00000514313 GRK1Q15835 563 aa3.33□□□□□ -1.88
NUP54-215ENST00000514313 GLT8D1Q68CQ7 371 aa3.33□□□□□ -1.88
NUP54-215ENST00000514313 Q6ZS52 159 aa3.33□□□□□ -1.88
NUP54-215ENST00000514313 C20orf196Q8IYI0 205 aa3.33□□□□□ -1.88
NUP54-215ENST00000514313 DNAJC30Q96LL9 226 aa3.33□□□□□ -1.88
NUP54-215ENST00000514313 CISHQ9NSE2 258 aa3.33□□□□□ -1.88
NUP54-215ENST00000514313 MRPL27Q9P0M9 148 aaKnown RBP3.33□□□□□ -1.88
NUP54-215ENST00000514313 CCL5P13501 91 aa3.32□□□□□ -1.88
NUP54-215ENST00000514313 AKR1C1Q04828 323 aa3.32□□□□□ -1.88
NUP54-215ENST00000514313 KRTAP6-3Q3LI67 103 aa3.32□□□□□ -1.88
NUP54-215ENST00000514313 ZNF283Q8N7M2 679 aa3.32□□□□□ -1.88
NUP54-215ENST00000514313 IMMP2LQ96T52 175 aa3.32□□□□□ -1.88
NUP54-215ENST00000514313 NUP160Q12769 1436 aa3.32□□□□□ -1.88
NUP54-215ENST00000514313 WRNQ14191 1432 aaPredicted RBP eCLIP3.32□□□□□ -1.88
NUP54-215ENST00000514313 SIPA1L1O43166 1804 aa3.32□□□□□ -1.88
NUP54-215ENST00000514313 NYNRINQ9P2P1 1898 aaKnown RBP3.32□□□□□ -1.88
NUP54-215ENST00000514313 FLT4P35916 1363 aa3.31□□□□□ -1.88
NUP54-215ENST00000514313 TRBV20OR9-2A0A075B6H5 130 aa3.31□□□□□ -1.88
NUP54-215ENST00000514313 A0A0J9YY10 115 aa3.31□□□□□ -1.88
NUP54-215ENST00000514313 A0A1B0GX78 115 aa3.31□□□□□ -1.88
NUP54-215ENST00000514313 LEPROTO15243 131 aa3.31□□□□□ -1.88
NUP54-215ENST00000514313 AP1S1P61966 158 aa3.31□□□□□ -1.88
NUP54-215ENST00000514313 OR51T1Q8NGJ9 327 aa3.31□□□□□ -1.88
NUP54-215ENST00000514313 ZCCHC13Q8WW36 166 aaKnown RBP3.31□□□□□ -1.88
NUP54-215ENST00000514313 MRPS24Q96EL2 167 aaKnown RBP3.31□□□□□ -1.88
NUP54-215ENST00000514313 ULBP3Q9BZM4 244 aa3.31□□□□□ -1.88
NUP54-215ENST00000514313 NDUFB11Q9NX14 153 aa3.31□□□□□ -1.88
NUP54-215ENST00000514313 ARHGAP32A7KAX9 2087 aa3.31□□□□□ -1.88
NUP54-215ENST00000514313 PQLC2LA1A4F0 135 aa3.3□□□□□ -1.88
NUP54-215ENST00000514313 FAAHO00519 579 aa3.3□□□□□ -1.88
NUP54-215ENST00000514313 HLA-DRB1P01911 266 aa3.3□□□□□ -1.88
NUP54-215ENST00000514313 TTRP02766 147 aa3.3□□□□□ -1.88
NUP54-215ENST00000514313 ALDH3A1P30838 453 aa3.3□□□□□ -1.88
NUP54-215ENST00000514313 RPL5P46777 297 aaKnown RBP3.3□□□□□ -1.88
NUP54-215ENST00000514313 SNRPD2P62316 118 aaKnown RBP3.3□□□□□ -1.88
NUP54-215ENST00000514313 KCNJ8Q15842 424 aa3.3□□□□□ -1.88
NUP54-215ENST00000514313 LPCAT3Q6P1A2 487 aa3.3□□□□□ -1.88
NUP54-215ENST00000514313 SLC35E3Q7Z769 313 aa3.3□□□□□ -1.88
NUP54-215ENST00000514313 OR4X2Q8NGF9 303 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 587.6 ms