RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 RAB5AP20339 215 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 TAGLN2P37802 199 aaKnown RBP12.78□□□□□ -0.36
CCDC40-202ENST00000374876 HOXA1P49639 335 aaPredicted RBP12.78□□□□□ -0.36
CCDC40-202ENST00000374876 SPINK9Q5DT21 86 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 SSX7Q7RTT5 188 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 OR10G4Q8NGN3 311 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 TVP23CQ96ET8 276 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 CALYQ9NYX4 217 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 ARFGEF3Q5TH69 2177 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 MAP1LC3B2A6NCE7 125 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 NDUFS7O75251 213 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 PROP1O75360 226 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 HPRT1P00492 218 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 IGHV3-7P01780 117 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 RPL35P42766 123 aaKnown RBP12.78□□□□□ -0.36
CCDC40-202ENST00000374876 GATA4P43694 442 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 LOXL3P58215 753 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 TNFAIP6P98066 277 aaPredicted RBP12.78□□□□□ -0.36
CCDC40-202ENST00000374876 HNF4GQ14541 408 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 LINC00518Q8N0U6 118 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 ZNF561Q8N587 486 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 PERPQ96FX8 193 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 QTRT1Q9BXR0 403 aaKnown RBP12.78□□□□□ -0.36
CCDC40-202ENST00000374876 MAP1LC3BQ9GZQ8 125 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 FAM234AQ9H0X4 552 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 RAB9BQ9NP90 201 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 RNF7Q9UBF6 113 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 hCG_1809904A0A1W2PP81 198 aa12.77□□□□□ -0.37
CCDC40-202ENST00000374876 A0A1W2PR64 198 aa12.77□□□□□ -0.37
CCDC40-202ENST00000374876 A0A1W2PRV1 198 aa12.77□□□□□ -0.37
CCDC40-202ENST00000374876 IFNA1P01562 189 aa12.77□□□□□ -0.37
CCDC40-202ENST00000374876 IFNA17P01571 189 aa12.77□□□□□ -0.37
CCDC40-202ENST00000374876 FGF7P21781 194 aa12.77□□□□□ -0.37
CCDC40-202ENST00000374876 RAB11AP62491 216 aa12.77□□□□□ -0.37
CCDC40-202ENST00000374876 DLK1P80370 383 aa12.77□□□□□ -0.37
CCDC40-202ENST00000374876 EFNB3Q15768 340 aa12.77□□□□□ -0.37
CCDC40-202ENST00000374876 RPL39P5Q59GN2 51 aa12.77□□□□□ -0.37
CCDC40-202ENST00000374876 FAM201AQ5SY85 155 aa12.77□□□□□ -0.37
CCDC40-202ENST00000374876 CENPVQ7Z7K6 275 aaPredicted RBP12.77□□□□□ -0.37
CCDC40-202ENST00000374876 GCM1Q9NP62 436 aa12.77□□□□□ -0.37
CCDC40-202ENST00000374876 SLC39A9Q9NUM3 307 aa12.77□□□□□ -0.37
CCDC40-202ENST00000374876 IL19Q9UHD0 177 aa12.77□□□□□ -0.37
CCDC40-202ENST00000374876 PRRC2AP48634 2157 aaKnown RBP12.77□□□□□ -0.37
CCDC40-202ENST00000374876 PMS2P5A8MQ11 134 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 TNFSF4P23510 183 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 OR2B8PP59922 312 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 RPS16P62249 146 aaKnown RBP12.76□□□□□ -0.37
CCDC40-202ENST00000374876 PRAMEF5Q5TYX0 476 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 SLC35E3Q7Z769 313 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 MBD6Q96DN6 1003 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 IFI27L2Q9H2X8 130 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 FAM90A9PA6NNJ1 464 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 IGHV1-46P01743 117 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 MBP02144 154 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 OR9G9P0C7N8 305 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 SELLP14151 372 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 ZNF134P52741 427 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 ERVK-16P61578 105 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 SSX9Q7RTT3 188 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 RPP25LQ8N5L8 163 aaKnown RBP12.76□□□□□ -0.37
CCDC40-202ENST00000374876 OR4A16Q8NH70 328 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 LHX4Q969G2 390 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 S1PR3Q99500 378 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 NCOR1P1Q9H4R4 102 aa12.76□□□□□ -0.37
CCDC40-202ENST00000374876 BEX4Q9NWD9 120 aaPredicted RBP12.76□□□□□ -0.37
CCDC40-202ENST00000374876 A0A087WWC5 75 aa12.75□□□□□ -0.37
CCDC40-202ENST00000374876 RBFOX2O43251 390 aaKnown RBP eCLIP12.75□□□□□ -0.37
CCDC40-202ENST00000374876 S100A6P06703 90 aa12.75□□□□□ -0.37
CCDC40-202ENST00000374876 RAB7AP51149 207 aa12.75□□□□□ -0.37
CCDC40-202ENST00000374876 GNB2P62879 340 aa12.75□□□□□ -0.37
CCDC40-202ENST00000374876 ACSM6Q6P461 480 aa12.75□□□□□ -0.37
CCDC40-202ENST00000374876 ZNF709Q8N972 641 aa12.75□□□□□ -0.37
CCDC40-202ENST00000374876 VAX2Q9UIW0 290 aa12.75□□□□□ -0.37
CCDC40-202ENST00000374876 MYO9AB2RTY4 2548 aa12.75□□□□□ -0.37
CCDC40-202ENST00000374876 TRGV10A0A0A0MS01 117 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 LY86O95711 162 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 CYB5R3P00387 301 aaPredicted RBP12.74□□□□□ -0.37
CCDC40-202ENST00000374876 IGKV1D-33P01593 117 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 IGKV1-33P01594 117 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 KIR2DS2P43631 304 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 ATP5J2P56134 94 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 RBMS3Q6XE24 437 aaKnown RBP12.74□□□□□ -0.37
CCDC40-202ENST00000374876 DEFB108BQ8NET1 73 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 SDSLQ96GA7 329 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 P2RX4Q99571 388 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 DYNLRB1Q9NP97 96 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 MAP1AP78559 2803 aaPredicted RBP12.74□□□□□ -0.37
CCDC40-202ENST00000374876 KBTBD11-OT1A0A1B0GTJ5 212 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 ZNF727A8MUV8 499 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 LY6HO94772 140 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 IFNA4P05014 189 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 NQO2P16083 231 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 SPCS3P61009 180 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 C17orf58Q2M2W7 97 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 VWC2Q2TAL6 325 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 AARDQ4LEZ3 155 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 FFAR4Q5NUL3 377 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 STUMQ69YW2 141 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 LEAP2Q969E1 77 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 NPCDR1Q9BY65 106 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms