RNA–Protein interactions for RNA: ENST00000374253.9

CNKSR1-202, Transcript of connector enhancer of kinase suppressor of Ras 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CNKSR1, Length 2,538 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR1-202ENST00000374253 CSMD1Q96PZ7 3565 aa13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 TRAV38-1A0A0B4J264 116 aa13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 PLAUP00749 431 aa13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 ATP6V1FQ16864 119 aa13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 ZNF674Q2M3X9 581 aa13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 LINC01560Q8TB33 94 aa13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 UNKLQ9H9P5 680 aaKnown RBP13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 CISD1Q9NZ45 108 aaKnown RBP13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 FAM90A27PA6NNH2 459 aa13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 E7EQL1 145 aa13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 GFRA3O60609 400 aa13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 MT-ND4LP03901 98 aa13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 IFNA4P05014 189 aa13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 RAB5AP20339 215 aa13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 CD1BP29016 333 aa13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 TVP23CQ96ET8 276 aa13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 PARD6GQ9BYG4 376 aaPredicted RBP13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 PATZ1Q9HBE1 687 aaKnown RBP13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 DYNLRB1Q9NP97 96 aa13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 SPTBN1Q01082 2364 aaKnown RBP13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 NKX6-3A6NJ46 265 aa13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 VDAC2P45880 294 aaPredicted RBP13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 DLX1P56177 255 aa13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 SNRPEP62304 92 aaKnown RBP13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 GNB2P62879 340 aa13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 RAB24Q969Q5 203 aa13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 HIPK2Q9H2X6 1198 aa13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 RPUSD1Q9UJJ7 312 aaKnown RBP13.1□□□□□ -0.31
CNKSR1-202ENST00000374253 PPIAL4EA0A075B759 164 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 ZNF729A6NN14 1252 aaPredicted RBP13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 SRRM4A7MD48 611 aaKnown RBP13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 SHISA9B4DS77 424 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 PPIAL4DF5H284 164 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 LYNX1G3V0Z9 82 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 RBFOX2O43251 390 aaKnown RBP eCLIP13.09□□□□□ -0.311e-9■■■■■ 33.1
CNKSR1-202ENST00000374253 CT45A6P0DMU7 189 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 CT45A5P0DMU8 189 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 CT45A7P0DMV0 189 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 PPIAL4FP0DN26 164 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 LYNX1P0DP58 116 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 DMRTC2Q8IXT2 367 aaPredicted RBP13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 FAM122AQ96E09 287 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 PPIAL4AQ9Y536 164 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 TIMM9Q9Y5J7 89 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 PLXNB1O43157 2135 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 hADV38S2A0JD32 116 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 C1orf196B1AJZ1 125 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 TMEM178BH3BS89 294 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 DIAPH2-AS1Q14236 149 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 Q8N7P7 452 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 RNASE6Q93091 150 aaKnown RBP13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 EGLN1Q9GZT9 426 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 MS4A5Q9H3V2 200 aa13.09□□□□□ -0.31
CNKSR1-202ENST00000374253 CD81P60033 236 aa13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 RAB5BP61020 215 aa13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 TMEM200BQ69YZ2 307 aa13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 CENPVQ7Z7K6 275 aaPredicted RBP13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 SSMEM1Q8WWF3 244 aa13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 RPUSD4Q96CM3 377 aaKnown RBP13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 TMEM106BQ9NUM4 274 aa13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 VAX2Q9UIW0 290 aa13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 HRNRQ86YZ3 2850 aaPredicted RBP13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 C15orf61A6NNL5 157 aa13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 SOX15O60248 233 aa13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 THBS3P49746 956 aa13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 VWC2Q2TAL6 325 aa13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 KDF1Q8NAX2 398 aaPredicted RBP13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 CTSZQ9UBR2 303 aa13.08□□□□□ -0.32
CNKSR1-202ENST00000374253 CTXND1A0A1B0GTU2 59 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 TREML4Q6UXN2 200 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 SLC25A48Q6ZT89 311 aaKnown RBP13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 OR13D1Q8NGV5 346 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 MRPL20Q9BYC9 149 aaKnown RBP13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 TUBA4BQ9H853 241 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 BIN3Q9NQY0 253 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 SLC35D1Q9NTN3 355 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 PCP4L1A6NKN8 68 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 CXCL1P09341 107 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 PAX6P26367 422 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 KIR2DS2P43631 304 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 UBE2G2P60604 165 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 RBPJQ06330 500 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 MIC13Q5XKP0 118 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 ACTR3CQ9C0K3 210 aaPredicted RBP13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 WDR83OSQ9Y284 106 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 LINC00312Q9Y6C7 94 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 MALRD1Q5VYJ5 2156 aa13.07□□□□□ -0.32
CNKSR1-202ENST00000374253 TGIF2-C20orf24A0A0A6YYL0 155 aa13.06□□□□□ -0.32
CNKSR1-202ENST00000374253 MDKP21741 143 aaPredicted RBP13.06□□□□□ -0.32
CNKSR1-202ENST00000374253 RPS10P46783 165 aaKnown RBP13.06□□□□□ -0.32
CNKSR1-202ENST00000374253 MEF2BQ02080 365 aaPredicted RBP13.06□□□□□ -0.32
CNKSR1-202ENST00000374253 KIAA0141Q14154 515 aaPredicted RBP13.06□□□□□ -0.32
CNKSR1-202ENST00000374253 AARDQ4LEZ3 155 aa13.06□□□□□ -0.32
CNKSR1-202ENST00000374253 OR4F5Q8NH21 305 aa13.06□□□□□ -0.32
CNKSR1-202ENST00000374253 Q8WTZ3 238 aa13.06□□□□□ -0.32
CNKSR1-202ENST00000374253 ZNF714Q96N38 554 aa13.06□□□□□ -0.32
CNKSR1-202ENST00000374253 OR4F4Q96R69 305 aa13.06□□□□□ -0.32
CNKSR1-202ENST00000374253 SSX3Q99909 188 aa13.06□□□□□ -0.32
CNKSR1-202ENST00000374253 NCOR1P1Q9H4R4 102 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms