RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 SSMEM1Q8WWF3 244 aa18.2■□□□□ 0.5
SHMT1-201ENST00000316694 TMEM18Q96B42 140 aa18.2■□□□□ 0.5
SHMT1-201ENST00000316694 TRAPPC1Q9Y5R8 145 aa18.2■□□□□ 0.5
SHMT1-201ENST00000316694 F6UZH7 168 aa18.2■□□□□ 0.5
SHMT1-201ENST00000316694 ZNF134P52741 427 aa18.2■□□□□ 0.5
SHMT1-201ENST00000316694 GGTLC1Q9BX51 225 aa18.2■□□□□ 0.5
SHMT1-201ENST00000316694 GCGP01275 180 aa18.19■□□□□ 0.5
SHMT1-201ENST00000316694 IGHG3P01860 377 aa18.19■□□□□ 0.5
SHMT1-201ENST00000316694 CD99P14209 185 aa18.19■□□□□ 0.5
SHMT1-201ENST00000316694 VDAC2P45880 294 aaPredicted RBP18.19■□□□□ 0.5
SHMT1-201ENST00000316694 ZNRF1Q8ND25 227 aa18.19■□□□□ 0.5
SHMT1-201ENST00000316694 SGMS2Q8NHU3 365 aa18.19■□□□□ 0.5
SHMT1-201ENST00000316694 TMEM140Q9NV12 185 aa18.19■□□□□ 0.5
SHMT1-201ENST00000316694 JPT1Q9UK76 154 aa18.19■□□□□ 0.5
SHMT1-201ENST00000316694 TRBV20OR9-2A0A075B6H5 130 aa18.18■□□□□ 0.5
SHMT1-201ENST00000316694 IGHV1-18A0A0C4DH31 117 aa18.18■□□□□ 0.5
SHMT1-201ENST00000316694 AQP7O14520 342 aa18.18■□□□□ 0.5
SHMT1-201ENST00000316694 RBFOX2O43251 390 aaKnown RBP eCLIP18.18■□□□□ 0.5
SHMT1-201ENST00000316694 GFRA3O60609 400 aa18.18■□□□□ 0.5
SHMT1-201ENST00000316694 AARDQ4LEZ3 155 aa18.18■□□□□ 0.5
SHMT1-201ENST00000316694 SFRP2Q96HF1 295 aa18.18■□□□□ 0.5
SHMT1-201ENST00000316694 S1PR3Q99500 378 aa18.18■□□□□ 0.5
SHMT1-201ENST00000316694 LAMA5O15230 3695 aa18.18■□□□□ 0.5
SHMT1-201ENST00000316694 MKRN2OSH3BPM6 223 aa18.18■□□□□ 0.5
SHMT1-201ENST00000316694 RELBQ01201 579 aa18.18■□□□□ 0.5
SHMT1-201ENST00000316694 TMEM249Q2WGJ8 235 aa18.18■□□□□ 0.5
SHMT1-201ENST00000316694 C1orf162Q8NEQ5 155 aaPredicted RBP18.18■□□□□ 0.5
SHMT1-201ENST00000316694 LEAP2Q969E1 77 aa18.18■□□□□ 0.5
SHMT1-201ENST00000316694 MDFIC2A0A1B0GVS7 189 aa18.17■□□□□ 0.5
SHMT1-201ENST00000316694 SCO2A0A1W2PP80 73 aa18.17■□□□□ 0.5
SHMT1-201ENST00000316694 FAM90A9PA6NNJ1 464 aa18.17■□□□□ 0.5
SHMT1-201ENST00000316694 A8MWP6 167 aa18.17■□□□□ 0.5
SHMT1-201ENST00000316694 SOX15O60248 233 aa18.17■□□□□ 0.5
SHMT1-201ENST00000316694 RPL15P61313 204 aaKnown RBP18.17■□□□□ 0.5
SHMT1-201ENST00000316694 FDCSPQ8NFU4 85 aa18.17■□□□□ 0.5
SHMT1-201ENST00000316694 CXorf1O96002 111 aa18.17■□□□□ 0.5
SHMT1-201ENST00000316694 STAG3L2P0CL84 134 aa18.17■□□□□ 0.5
SHMT1-201ENST00000316694 STAG3L3P0CL85 134 aa18.17■□□□□ 0.5
SHMT1-201ENST00000316694 TRIP6Q15654 476 aaKnown RBP18.17■□□□□ 0.5
SHMT1-201ENST00000316694 MBNL2Q5VZF2 373 aaKnown RBP18.17■□□□□ 0.5
SHMT1-201ENST00000316694 TMEM144Q7Z5S9 345 aa18.17■□□□□ 0.5
SHMT1-201ENST00000316694 FAM90A1Q86YD7 464 aa18.17■□□□□ 0.5
SHMT1-201ENST00000316694 OPN3Q9H1Y3 402 aaPredicted RBP18.17■□□□□ 0.5
SHMT1-201ENST00000316694 CADP27708 2225 aa18.17■□□□□ 0.5
SHMT1-201ENST00000316694 PRSS46E5RG02 174 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 YPEL1O60688 119 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 PAX1P15863 534 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 UTF1Q5T230 341 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 LRP11Q86VZ4 500 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 YPEL2Q96QA6 119 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 IFI27L2Q9H2X8 130 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 TCF19Q9Y242 345 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 CACNA1GO43497 2377 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 A0A1B0GUS0 222 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 SRRM5B3KS81 715 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 MGST3O14880 152 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 SLC31A2O15432 143 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 RNF224P0DH78 156 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 COL8A2P25067 703 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 LOXL3P58215 753 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 PAX5Q02548 391 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 GBGT1Q8N5D6 347 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 OR52E5Q8NH55 327 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 EP300Q09472 2414 aaPredicted RBP18.16■□□□□ 0.5
SHMT1-201ENST00000316694 CACNA1HO95180 2353 aa18.16■□□□□ 0.5
SHMT1-201ENST00000316694 IGLV1-44P01699 117 aa18.15■□□□□ 0.5
SHMT1-201ENST00000316694 TCF23Q7RTU1 214 aa18.15■□□□□ 0.5
SHMT1-201ENST00000316694 TUBG2Q9NRH3 451 aa18.15■□□□□ 0.5
SHMT1-201ENST00000316694 MZT1Q08AG7 82 aa18.15■□□□□ 0.5
SHMT1-201ENST00000316694 FOXL1Q12952 345 aa18.15■□□□□ 0.5
SHMT1-201ENST00000316694 SPRNQ5BIV9 151 aa18.15■□□□□ 0.5
SHMT1-201ENST00000316694 C1orf229Q6ZS94 237 aaPredicted RBP18.15■□□□□ 0.5
SHMT1-201ENST00000316694 YTHDF2Q9Y5A9 579 aaKnown RBP18.15■□□□□ 0.5
SHMT1-201ENST00000316694 DMXL1Q9Y485 3027 aa18.15■□□□□ 0.5
SHMT1-201ENST00000316694 SNRPCP09234 159 aaKnown RBP18.14■□□□□ 0.5
SHMT1-201ENST00000316694 MSMPQ1L6U9 139 aa18.14■□□□□ 0.5
SHMT1-201ENST00000316694 GCSAMQ8N6F7 178 aa18.14■□□□□ 0.5
SHMT1-201ENST00000316694 PPP1R35Q8TAP8 253 aa18.14■□□□□ 0.5
SHMT1-201ENST00000316694 NOL4LQ96MY1 436 aaPredicted RBP18.14■□□□□ 0.5
SHMT1-201ENST00000316694 CCKARP32238 428 aa18.14■□□□□ 0.49
SHMT1-201ENST00000316694 THBS3P49746 956 aa18.14■□□□□ 0.49
SHMT1-201ENST00000316694 TMPRSS3P57727 454 aa18.14■□□□□ 0.49
SHMT1-201ENST00000316694 TMEM256Q8N2U0 113 aa18.14■□□□□ 0.49
SHMT1-201ENST00000316694 OCC1Q8TAD7 63 aa18.14■□□□□ 0.49
SHMT1-201ENST00000316694 IMMP2LQ96T52 175 aa18.14■□□□□ 0.49
SHMT1-201ENST00000316694 NPVFQ9HCQ7 196 aa18.14■□□□□ 0.49
SHMT1-201ENST00000316694 SEPSECSQ9HD40 501 aaKnown RBP18.14■□□□□ 0.49
SHMT1-201ENST00000316694 ELOVL5Q9NYP7 299 aa18.14■□□□□ 0.49
SHMT1-201ENST00000316694 PRR33A8MZF0 331 aa18.13■□□□□ 0.49
SHMT1-201ENST00000316694 IL6RP08887 468 aaPredicted RBP18.13■□□□□ 0.49
SHMT1-201ENST00000316694 OR4A8P0C604 315 aa18.13■□□□□ 0.49
SHMT1-201ENST00000316694 USF2Q15853 346 aaPredicted RBP18.13■□□□□ 0.49
SHMT1-201ENST00000316694 SPATA31B1PQ5VZV4 182 aa18.13■□□□□ 0.49
SHMT1-201ENST00000316694 MOGAT3Q86VF5 341 aa18.13■□□□□ 0.49
SHMT1-201ENST00000316694 C1orf159Q96HA4 380 aa18.13■□□□□ 0.49
SHMT1-201ENST00000316694 BTF3L4Q96K17 158 aa18.13■□□□□ 0.49
SHMT1-201ENST00000316694 SSX2Q16385 188 aa18.13■□□□□ 0.49
SHMT1-201ENST00000316694 ARSJQ5FYB0 599 aaPredicted RBP18.13■□□□□ 0.49
SHMT1-201ENST00000316694 MISP3Q96FF7 219 aa18.13■□□□□ 0.49
SHMT1-201ENST00000316694 CALYQ9NYX4 217 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms