RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 MDKP21741 143 aaPredicted RBP18.01■□□□□ 0.47
SHMT1-202ENST00000352886 ERVK-16P61578 105 aa18.01■□□□□ 0.47
SHMT1-202ENST00000352886 DUX4L9Q6RFH8 374 aaPredicted RBP18.01■□□□□ 0.47
SHMT1-202ENST00000352886 C17orf112F2Z3M2 114 aa18.01■□□□□ 0.47
SHMT1-202ENST00000352886 RBFOX2O43251 390 aaKnown RBP eCLIP18.01■□□□□ 0.47
SHMT1-202ENST00000352886 DEFA4P12838 97 aa18.01■□□□□ 0.47
SHMT1-202ENST00000352886 GATA4P43694 442 aa18.01■□□□□ 0.47
SHMT1-202ENST00000352886 KIAA0141Q14154 515 aaPredicted RBP18.01■□□□□ 0.47
SHMT1-202ENST00000352886 C17orf58Q2M2W7 97 aa18.01■□□□□ 0.47
SHMT1-202ENST00000352886 C1orf229Q6ZS94 237 aaPredicted RBP18.01■□□□□ 0.47
SHMT1-202ENST00000352886 RAB24Q969Q5 203 aa18.01■□□□□ 0.47
SHMT1-202ENST00000352886 OR51M1Q9H341 326 aa18.01■□□□□ 0.47
SHMT1-202ENST00000352886 GCM1Q9NP62 436 aa18.01■□□□□ 0.47
SHMT1-202ENST00000352886 AKAP13Q12802 2813 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 TRBV23-1A0A0A0MS06 115 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 CYB5BO43169 146 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 CGB3P0DN86 165 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 CGB7P0DN87 165 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 BMP5P22003 454 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 PSMB3P49720 205 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 SPCS3P61009 180 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 TCF15Q12870 199 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 RNF7Q9UBF6 113 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 MIOXQ9UGB7 285 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 RIF1Q5UIP0 2472 aaKnown RBP18■□□□□ 0.47
SHMT1-202ENST00000352886 IFNA10P01566 189 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 CD1BP29016 333 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 CEACAM8P31997 349 aaPredicted RBP18■□□□□ 0.47
SHMT1-202ENST00000352886 SELENOVP59797 346 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 TNFAIP6P98066 277 aaPredicted RBP18■□□□□ 0.47
SHMT1-202ENST00000352886 GATAD1Q8WUU5 269 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 SMIM7Q9BQ49 75 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 TMEM242Q9NWH2 141 aa18■□□□□ 0.47
SHMT1-202ENST00000352886 TRAV3A0A0B4J244 114 aa17.99■□□□□ 0.47
SHMT1-202ENST00000352886 IGHV1-46P01743 117 aa17.99■□□□□ 0.47
SHMT1-202ENST00000352886 NUBP1P53384 320 aa17.99■□□□□ 0.47
SHMT1-202ENST00000352886 FAM222BQ8WU58 562 aa17.99■□□□□ 0.47
SHMT1-202ENST00000352886 A8MXE2 369 aa17.99■□□□□ 0.47
SHMT1-202ENST00000352886 CLDN34H7C241 214 aa17.99■□□□□ 0.47
SHMT1-202ENST00000352886 GATCO43716 136 aaKnown RBP17.99■□□□□ 0.47
SHMT1-202ENST00000352886 Q8N7P7 452 aa17.99■□□□□ 0.47
SHMT1-202ENST00000352886 DEFB108BQ8NET1 73 aa17.99■□□□□ 0.47
SHMT1-202ENST00000352886 FAM57AQ8TBR7 257 aa17.99■□□□□ 0.47
SHMT1-202ENST00000352886 HEYLQ9NQ87 328 aaPredicted RBP17.99■□□□□ 0.47
SHMT1-202ENST00000352886 TMEM140Q9NV12 185 aa17.99■□□□□ 0.47
SHMT1-202ENST00000352886 WDR83OSQ9Y284 106 aa17.99■□□□□ 0.47
SHMT1-202ENST00000352886 RAB7AP51149 207 aa17.98■□□□□ 0.47
SHMT1-202ENST00000352886 RELBQ01201 579 aa17.98■□□□□ 0.47
SHMT1-202ENST00000352886 CT45A1Q5HYN5 189 aa17.98■□□□□ 0.47
SHMT1-202ENST00000352886 NCMAPQ5T1S8 102 aa17.98■□□□□ 0.47
SHMT1-202ENST00000352886 CT45A3Q8NHU0 189 aa17.98■□□□□ 0.47
SHMT1-202ENST00000352886 DDB2Q92466 427 aa17.98■□□□□ 0.47
SHMT1-202ENST00000352886 GFOD1Q9NXC2 390 aa17.98■□□□□ 0.47
SHMT1-202ENST00000352886 IL19Q9UHD0 177 aa17.98■□□□□ 0.47
SHMT1-202ENST00000352886 KBTBD11-OT1A0A1B0GTJ5 212 aa17.98■□□□□ 0.47
SHMT1-202ENST00000352886 OR52E5Q8NH55 327 aa17.98■□□□□ 0.47
SHMT1-202ENST00000352886 RPUSD4Q96CM3 377 aaKnown RBP17.98■□□□□ 0.47
SHMT1-202ENST00000352886 MANBALQ9NQG1 85 aa17.98■□□□□ 0.47
SHMT1-202ENST00000352886 NAT8Q9UHE5 227 aa17.98■□□□□ 0.47
SHMT1-202ENST00000352886 DYSFO75923 2080 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 CEP250Q9BV73 2442 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 LY86O95711 162 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 S100PP25815 95 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 CD40P25942 277 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 RND2P52198 227 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 RPP30P78346 268 aaKnown RBP17.97■□□□□ 0.47
SHMT1-202ENST00000352886 STUMQ69YW2 141 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 SDSLQ96GA7 329 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 NCOR1P1Q9H4R4 102 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 CUL9Q8IWT3 2517 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 SAA2-SAA4A0A096LPE2 208 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 SMCO3A2RU48 225 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 RRHO14718 337 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 IGHV2-70P01814 119 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 SAA2P0DJI9 122 aaPredicted RBP17.97■□□□□ 0.47
SHMT1-202ENST00000352886 KIR2DS2P43631 304 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 VDAC2P45880 294 aaPredicted RBP17.97■□□□□ 0.47
SHMT1-202ENST00000352886 YLPM1P49750 1951 aaKnown RBP17.97■□□□□ 0.47
SHMT1-202ENST00000352886 ACOT6Q3I5F7 207 aaPredicted RBP17.97■□□□□ 0.47
SHMT1-202ENST00000352886 KRTCAP3Q53RY4 240 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 C1orf87Q8N0U7 546 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 SSX3Q99909 188 aa17.97■□□□□ 0.47
SHMT1-202ENST00000352886 TRGV10A0A0A0MS01 117 aa17.96■□□□□ 0.47
SHMT1-202ENST00000352886 TMEM250H0YL14 139 aa17.96■□□□□ 0.47
SHMT1-202ENST00000352886 KBTBD11O94819 623 aa17.96■□□□□ 0.47
SHMT1-202ENST00000352886 CDC34P49427 236 aaPredicted RBP17.96■□□□□ 0.47
SHMT1-202ENST00000352886 ADIRFQ15847 76 aa17.96■□□□□ 0.47
SHMT1-202ENST00000352886 CYP2G1PQ6ZSU1 146 aa17.96■□□□□ 0.47
SHMT1-202ENST00000352886 OR4F5Q8NH21 305 aa17.96■□□□□ 0.47
SHMT1-202ENST00000352886 OR4S2Q8NH73 311 aa17.96■□□□□ 0.47
SHMT1-202ENST00000352886 OR4F4Q96R69 305 aa17.96■□□□□ 0.47
SHMT1-202ENST00000352886 TCEAL7Q9BRU2 100 aa17.96■□□□□ 0.47
SHMT1-202ENST00000352886 RAB9BQ9NP90 201 aa17.96■□□□□ 0.47
SHMT1-202ENST00000352886 ITGB1BP1O14713 200 aa17.96■□□□□ 0.46
SHMT1-202ENST00000352886 TMEM241Q24JQ0 296 aa17.96■□□□□ 0.46
SHMT1-202ENST00000352886 GCSAMLQ5JQS6 135 aa17.96■□□□□ 0.46
SHMT1-202ENST00000352886 FAM210BQ96KR6 192 aa17.96■□□□□ 0.46
SHMT1-202ENST00000352886 GAB2Q9UQC2 676 aa17.96■□□□□ 0.46
SHMT1-202ENST00000352886 GFRA3O60609 400 aa17.95■□□□□ 0.46
SHMT1-202ENST00000352886 CLN5O75503 358 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms