RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	NIT3	P49954	291 aa		4.86	□□□□□ -1.63
UBC8	YEL012W	YPR196W	Q06595	470 aa		4.86	□□□□□ -1.63
UBC8	YEL012W	NSI1	Q12457	570 aa		4.86	□□□□□ -1.63
UBC8	YEL012W	BEM2	P39960	2167 aa	Known RBP	4.86	□□□□□ -1.63
UBC8	YEL012W	SFL1	P20134	766 aa		4.85	□□□□□ -1.63
UBC8	YEL012W	SRP54	P20424	541 aa	Known RBP	4.85	□□□□□ -1.63
UBC8	YEL012W	ANP1	P32629	500 aa		4.85	□□□□□ -1.63
UBC8	YEL012W	SRP101	P32916	621 aa		4.85	□□□□□ -1.63
UBC8	YEL012W	PCM1	P38628	557 aa	Known RBP	4.85	□□□□□ -1.63
UBC8	YEL012W	CSM2	P40465	213 aa		4.85	□□□□□ -1.63
UBC8	YEL012W	PMT3	P47190	753 aa		4.85	□□□□□ -1.63
UBC8	YEL012W	FMS1	P50264	508 aa		4.85	□□□□□ -1.63
UBC8	YEL012W	TAD1	P53065	400 aa		4.85	□□□□□ -1.63
UBC8	YEL012W	SDA1	P53313	767 aa	Known RBP	4.85	□□□□□ -1.63
UBC8	YEL012W	PNG1	Q02890	363 aa		4.85	□□□□□ -1.63
UBC8	YEL012W	UME1	Q03010	460 aa		4.85	□□□□□ -1.63
UBC8	YEL012W	LRS4	Q04087	347 aa	Known RBP	4.85	□□□□□ -1.63
UBC8	YEL012W	YDR514C	Q04408	483 aa		4.85	□□□□□ -1.63
UBC8	YEL012W	REH1	Q06709	432 aa		4.85	□□□□□ -1.63
UBC8	YEL012W	GUD1	Q07729	489 aa		4.85	□□□□□ -1.63
UBC8	YEL012W	RIF1	P29539	1916 aa		4.84	□□□□□ -1.63
UBC8	YEL012W	SWI6	P09959	803 aa		4.84	□□□□□ -1.63
UBC8	YEL012W	SNA3	P14359	133 aa		4.84	□□□□□ -1.63
UBC8	YEL012W	DAL7	P21826	554 aa		4.84	□□□□□ -1.63
UBC8	YEL012W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.84	□□□□□ -1.63	not detected
UBC8	YEL012W	STE13	P33894	931 aa		4.84	□□□□□ -1.63
UBC8	YEL012W	POA1	P38218	177 aa		4.84	□□□□□ -1.63
UBC8	YEL012W	YGR237C	P50089	785 aa		4.84	□□□□□ -1.63
UBC8	YEL012W	NOG2	P53742	486 aa	Known RBP	4.84	□□□□□ -1.63
UBC8	YEL012W	YNL034W	P53963	612 aa		4.84	□□□□□ -1.63
UBC8	YEL012W	YNL018C	P53976	612 aa		4.84	□□□□□ -1.63
UBC8	YEL012W	SNP1	Q00916	300 aa	Predicted RBP	4.84	□□□□□ -1.63
UBC8	YEL012W	YDR338C	Q05497	695 aa		4.84	□□□□□ -1.63
UBC8	YEL012W	ATG33	Q06485	197 aa		4.84	□□□□□ -1.63
UBC8	YEL012W	HMG1	P12683	1054 aa		4.83	□□□□□ -1.64
UBC8	YEL012W	KIN2	P13186	1147 aa	Known RBP	4.83	□□□□□ -1.64
UBC8	YEL012W	KIN82	P25341	720 aa		4.83	□□□□□ -1.64
UBC8	YEL012W	HOG1	P32485	435 aa		4.83	□□□□□ -1.64
UBC8	YEL012W	RPD3	P32561	433 aa		4.83	□□□□□ -1.64
UBC8	YEL012W	FAF1	P40546	346 aa	Predicted RBP	4.83	□□□□□ -1.64
UBC8	YEL012W	RAI1	P53063	387 aa	Known RBP	4.83	□□□□□ -1.64
UBC8	YEL012W	LIF1	P53150	421 aa		4.83	□□□□□ -1.64
UBC8	YEL012W	PTA1	Q01329	785 aa	Predicted RBP	4.83	□□□□□ -1.64
UBC8	YEL012W	RPT6	Q01939	405 aa	Known RBP	4.83	□□□□□ -1.64
UBC8	YEL012W	RSM24	Q03976	319 aa		4.83	□□□□□ -1.64
UBC8	YEL012W	COG8	Q04632	607 aa		4.83	□□□□□ -1.64
UBC8	YEL012W	MED7	Q08278	222 aa		4.83	□□□□□ -1.64
UBC8	YEL012W	YDL177C	Q12257	170 aa		4.83	□□□□□ -1.64
UBC8	YEL012W	YBR182C-A	Q8TGU6	64 aa		4.83	□□□□□ -1.64
UBC8	YEL012W	TEL1	P38110	2787 aa		4.82	□□□□□ -1.64
UBC8	YEL012W	PRC1	P00729	532 aa		4.82	□□□□□ -1.64
UBC8	YEL012W	RFA1	P22336	621 aa	Known RBP	4.82	□□□□□ -1.64
UBC8	YEL012W	HSP78	P33416	811 aa		4.82	□□□□□ -1.64
UBC8	YEL012W	OSH3	P38713	996 aa	Known RBP	4.82	□□□□□ -1.64
UBC8	YEL012W	ALD5	P40047	520 aa	Known RBP	4.82	□□□□□ -1.64
UBC8	YEL012W	GPP1	P41277	250 aa	Known RBP	4.82	□□□□□ -1.64
UBC8	YEL012W	ATG36	P46983	293 aa		4.82	□□□□□ -1.64
UBC8	YEL012W	YJR096W	P47137	282 aa		4.82	□□□□□ -1.64
UBC8	YEL012W	AIM14	P53109	570 aa		4.82	□□□□□ -1.64
UBC8	YEL012W	ENV11	P53246	860 aa		4.82	□□□□□ -1.64
UBC8	YEL012W	YKR011C	Q02209	353 aa		4.82	□□□□□ -1.64
UBC8	YEL012W	MTQ2	Q03920	221 aa	Predicted RBP	4.82	□□□□□ -1.64
UBC8	YEL012W	SSL1	Q04673	461 aa	Predicted RBP	4.82	□□□□□ -1.64
UBC8	YEL012W	BRE1	Q07457	700 aa	Known RBP	4.82	□□□□□ -1.64
UBC8	YEL012W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.82	□□□□□ -1.64	not detected
UBC8	YEL012W	YLR422W	Q06409	1932 aa		4.82	□□□□□ -1.64
UBC8	YEL012W	GAL10	P04397	699 aa		4.81	□□□□□ -1.64
UBC8	YEL012W	HSF1	P10961	833 aa		4.81	□□□□□ -1.64
UBC8	YEL012W	CMP2	P14747	604 aa		4.81	□□□□□ -1.64
UBC8	YEL012W	YTA12	P40341	825 aa		4.81	□□□□□ -1.64
UBC8	YEL012W	RLP7	P40693	322 aa	Known RBP	4.81	□□□□□ -1.64
UBC8	YEL012W	OPT1	P40897	799 aa		4.81	□□□□□ -1.64
UBC8	YEL012W	ALY2	P47029	1046 aa		4.81	□□□□□ -1.64
UBC8	YEL012W	YGR012W	P53206	393 aa		4.81	□□□□□ -1.64
UBC8	YEL012W	PLB2	Q03674	706 aa		4.81	□□□□□ -1.64
UBC8	YEL012W	MYO5	Q04439	1219 aa	Known RBP	4.81	□□□□□ -1.64
UBC8	YEL012W	TMA17	Q12513	150 aa		4.81	□□□□□ -1.64
UBC8	YEL012W	CYC1	P00044	109 aa	Predicted RBP	4.8	□□□□□ -1.64
UBC8	YEL012W	OPI1	P21957	404 aa		4.8	□□□□□ -1.64
UBC8	YEL012W	MAK31	P23059	88 aa		4.8	□□□□□ -1.64
UBC8	YEL012W	MRC1	P25588	1096 aa		4.8	□□□□□ -1.64
UBC8	YEL012W	PPZ1	P26570	692 aa		4.8	□□□□□ -1.64
UBC8	YEL012W	CYS3	P31373	394 aa	Known RBP	4.8	□□□□□ -1.64
UBC8	YEL012W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	not detected
UBC8	YEL012W	DRE2	P36152	348 aa		4.8	□□□□□ -1.64
UBC8	YEL012W	RFC1	P38630	861 aa	Known RBP	4.8	□□□□□ -1.64
UBC8	YEL012W	ZRG8	P40021	1076 aa		4.8	□□□□□ -1.64
UBC8	YEL012W	MND2	P40577	368 aa		4.8	□□□□□ -1.64
UBC8	YEL012W	CEP3	P40969	608 aa		4.8	□□□□□ -1.64
UBC8	YEL012W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	not detected
UBC8	YEL012W	YJR120W	P47157	116 aa		4.8	□□□□□ -1.64
UBC8	YEL012W	LSB1	P53281	241 aa		4.8	□□□□□ -1.64
UBC8	YEL012W	MDM1	Q01846	1127 aa		4.8	□□□□□ -1.64
UBC8	YEL012W	GUP2	Q08929	609 aa		4.8	□□□□□ -1.64
UBC8	YEL012W	THI21	Q08975	551 aa		4.8	□□□□□ -1.64
UBC8	YEL012W	FUB1	P25659	250 aa		4.79	□□□□□ -1.64
UBC8	YEL012W	CCR4	P31384	837 aa	Known RBP	4.79	□□□□□ -1.64
UBC8	YEL012W	TYE7	P33122	291 aa	Predicted RBP	4.79	□□□□□ -1.64
UBC8	YEL012W	ASE1	P50275	885 aa		4.79	□□□□□ -1.64
UBC8	YEL012W	YRB30	P53107	440 aa	Predicted RBP	4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 44.6 ms