RNA–Protein interactions for RNA: YAR007C

RFA1, Transcript of Subunit of heterotrimeric Replication Protein A (RPA), yeast

Gene RFA1, Length 1,866 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RFA1	YAR007C	PGA2	P53903	129 aa		5.68	□□□□□ -1.5
RFA1	YAR007C	RAT1	Q02792	1006 aa	Known RBP	5.68	□□□□□ -1.5
RFA1	YAR007C	IRC4	Q03036	179 aa		5.68	□□□□□ -1.5
RFA1	YAR007C	BCP1	Q06338	283 aa		5.68	□□□□□ -1.5
RFA1	YAR007C	GPR1	Q12361	961 aa		5.68	□□□□□ -1.5
RFA1	YAR007C	DPH6	Q12429	685 aa		5.68	□□□□□ -1.5
RFA1	YAR007C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	5.68	□□□□□ -1.5	not detected
RFA1	YAR007C	YPR089W	O13585	888 aa		5.67	□□□□□ -1.5
RFA1	YAR007C	SSC1	P0CS90	654 aa	Known RBP	5.67	□□□□□ -1.5
RFA1	YAR007C	ATR1	P13090	542 aa		5.67	□□□□□ -1.5
RFA1	YAR007C	THR1	P17423	357 aa	Known RBP	5.67	□□□□□ -1.5
RFA1	YAR007C	YSC84	P32793	468 aa		5.67	□□□□□ -1.5
RFA1	YAR007C	TIF3	P34167	436 aa	Known RBP	5.67	□□□□□ -1.5
RFA1	YAR007C	YEL1	P34225	687 aa		5.67	□□□□□ -1.5
RFA1	YAR007C	TGL4	P36165	910 aa		5.67	□□□□□ -1.5
RFA1	YAR007C	PDX3	P38075	228 aa	Known RBP	5.67	□□□□□ -1.5
RFA1	YAR007C	DUG2	P38149	878 aa		5.67	□□□□□ -1.5
RFA1	YAR007C	POP4	P38336	279 aa		5.67	□□□□□ -1.5
RFA1	YAR007C	RIC1	P40395	1056 aa		5.67	□□□□□ -1.5
RFA1	YAR007C	YJL107C	P42947	387 aa		5.67	□□□□□ -1.5
RFA1	YAR007C	BNA3	P47039	444 aa	Known RBP	5.67	□□□□□ -1.5
RFA1	YAR007C	PAN2	P53010	1115 aa	Predicted RBP	5.67	□□□□□ -1.5
RFA1	YAR007C	FMP30	Q02883	468 aa		5.67	□□□□□ -1.5
RFA1	YAR007C	CWC15	Q03772	175 aa	Known RBP	5.67	□□□□□ -1.5
RFA1	YAR007C	SNX3	Q08826	162 aa	Known RBP	5.67	□□□□□ -1.5
RFA1	YAR007C	MET32	Q12041	191 aa		5.67	□□□□□ -1.5
RFA1	YAR007C	SNF1	P06782	633 aa	Known RBP	5.66	□□□□□ -1.5
RFA1	YAR007C	PDC5	P16467	563 aa	Known RBP	5.66	□□□□□ -1.5
RFA1	YAR007C	TEC1	P18412	486 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	DBP5	P20449	482 aa	Known RBP	5.66	□□□□□ -1.5
RFA1	YAR007C	KAR4	P25583	335 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	SIP2	P34164	415 aa	Known RBP	5.66	□□□□□ -1.5
RFA1	YAR007C	SMF2	P38778	549 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	STL1	P39932	569 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	NUP82	P40368	713 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	ASG1	P40467	964 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	ROG3	P43602	733 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	YGL108C	P53139	140 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	UTP8	P53276	713 aa	Known RBP	5.66	□□□□□ -1.5
RFA1	YAR007C	RPT4	P53549	437 aa	Known RBP	5.66	□□□□□ -1.5
RFA1	YAR007C	BIO4	P53630	237 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	NSG2	P53898	299 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	KTR5	P53966	522 aa	Predicted RBP	5.66	□□□□□ -1.5
RFA1	YAR007C	CIK1	Q01649	594 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	ULP1	Q02724	621 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	BUL2	Q03758	920 aa	Known RBP	5.66	□□□□□ -1.5
RFA1	YAR007C	ATG16	Q03818	150 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	VAM6	Q07468	1049 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	NTO1	Q12311	748 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	SWI6	P09959	803 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	MSD1	P15179	658 aa	Known RBP	5.66	□□□□□ -1.5
RFA1	YAR007C	SLY41	P22215	453 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	VPS34	P22543	875 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	LCB1	P25045	558 aa	Known RBP	5.66	□□□□□ -1.5
RFA1	YAR007C	GFD2	P25370	566 aa	Known RBP	5.66	□□□□□ -1.5
RFA1	YAR007C	SEC21	P32074	935 aa	Known RBP	5.66	□□□□□ -1.5
RFA1	YAR007C	TPO5	P36029	618 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	DSE1	P40077	573 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	ULP2	P40537	1034 aa	Predicted RBP	5.66	□□□□□ -1.5
RFA1	YAR007C	FIG4	P42837	879 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	LEM3	P42838	414 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	LAM5	P43560	674 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	COS5	P47187	383 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	DSL1	P53847	754 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	SEN54	Q02825	467 aa	Predicted RBP	5.66	□□□□□ -1.5
RFA1	YAR007C	SMP3	Q04174	516 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	UFO1	Q04511	668 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	YPQ2	Q06328	317 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	MCM21	Q06675	368 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	ASA1	Q06822	443 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	TRE1	Q08919	783 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	YPL277C	Q08989	487 aa		5.66	□□□□□ -1.5
RFA1	YAR007C	ILV1	P00927	576 aa	Known RBP	5.65	□□□□□ -1.5
RFA1	YAR007C	CDC33	P07260	213 aa	Known RBP	5.65	□□□□□ -1.5
RFA1	YAR007C	STE6	P12866	1290 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	GYP6	P32806	458 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	VMA22	P38784	181 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	APE4	P38821	490 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	MKT1	P40850	830 aa	Known RBP	5.65	□□□□□ -1.5
RFA1	YAR007C	FMP32	P43557	207 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	YFH7	P43591	353 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	YGL176C	P46945	554 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	CTR1	P49573	406 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	NMA2	P53204	395 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	YGR111W	P53265	400 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	YGR125W	P53273	1036 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	FOL1	P53848	824 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	MMT1	Q03218	510 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	YDR222W	Q04925	415 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	ATG26	Q06321	1198 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	5.65	□□□□□ -1.5	not detected
RFA1	YAR007C	SPE4	Q12455	300 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	NOT5	Q12514	560 aa	Predicted RBP	5.65	□□□□□ -1.5
RFA1	YAR007C	VCX1	Q99385	411 aa		5.65	□□□□□ -1.5
RFA1	YAR007C	FKS1	P38631	1876 aa	Known RBP	5.65	□□□□□ -1.5
RFA1	YAR007C	TY4B-P	A0A0B7P3V8	1104 aa		5.64	□□□□□ -1.51
RFA1	YAR007C	RAD10	P06838	210 aa		5.64	□□□□□ -1.51
RFA1	YAR007C	HEM1	P09950	548 aa	Predicted RBP	5.64	□□□□□ -1.51
RFA1	YAR007C	SNF3	P10870	884 aa		5.64	□□□□□ -1.51
RFA1	YAR007C	GCN3	P14741	305 aa		5.64	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 15.5 ms