RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 ELP3Q9H9T3 547 aa9.92□□□□□ -0.82
CLK1-215ENST00000621181 CNNM1Q9NRU3 951 aa9.92□□□□□ -0.82
CLK1-215ENST00000621181 AOX1Q06278 1338 aa9.92□□□□□ -0.82
CLK1-215ENST00000621181 EN2P19622 333 aaPredicted RBP9.91□□□□□ -0.82
CLK1-215ENST00000621181 FOXO4P98177 505 aa9.91□□□□□ -0.82
CLK1-215ENST00000621181 LMBR1LQ6UX01 489 aa9.91□□□□□ -0.82
CLK1-215ENST00000621181 ARMC5Q96C12 935 aa9.91□□□□□ -0.82
CLK1-215ENST00000621181 TMEM106CQ9BVX2 250 aa9.91□□□□□ -0.82
CLK1-215ENST00000621181 TTF2Q9UNY4 1162 aaKnown RBP9.91□□□□□ -0.82
CLK1-215ENST00000621181 F6X3S4 739 aa9.91□□□□□ -0.82
CLK1-215ENST00000621181 ARHGEF6Q15052 776 aa9.91□□□□□ -0.82
CLK1-215ENST00000621181 SLC9C1Q4G0N8 1177 aa9.91□□□□□ -0.82
CLK1-215ENST00000621181 NBPF11Q86T75 865 aa9.91□□□□□ -0.82
CLK1-215ENST00000621181 ZNF594Q96JF6 807 aaPredicted RBP9.91□□□□□ -0.82
CLK1-215ENST00000621181 TDRD3Q9H7E2 651 aaKnown RBP9.91□□□□□ -0.82
CLK1-215ENST00000621181 ZNF70Q9UC06 446 aaPredicted RBP9.91□□□□□ -0.82
CLK1-215ENST00000621181 SERPINA10Q9UK55 444 aa9.91□□□□□ -0.82
CLK1-215ENST00000621181 A0A1B0GUL6 1792 aa9.91□□□□□ -0.82
CLK1-215ENST00000621181 IL16Q14005 1332 aa9.9□□□□□ -0.82
CLK1-215ENST00000621181 FANCIQ9NVI1 1328 aa9.9□□□□□ -0.82
CLK1-215ENST00000621181 RBBP6Q7Z6E9 1792 aaKnown RBP9.9□□□□□ -0.82
CLK1-215ENST00000621181 OTOFQ9HC10 1997 aa9.9□□□□□ -0.82
CLK1-215ENST00000621181 TESPA1A2RU30 521 aaPredicted RBP9.9□□□□□ -0.82
CLK1-215ENST00000621181 TCP10L2B9ZVM9 353 aa9.9□□□□□ -0.82
CLK1-215ENST00000621181 TAF1CQ15572 869 aaPredicted RBP9.9□□□□□ -0.82
CLK1-215ENST00000621181 MS4A4AQ96JQ5 239 aa9.9□□□□□ -0.82
CLK1-215ENST00000621181 CSADQ9Y600 493 aa9.9□□□□□ -0.82
CLK1-215ENST00000621181 CCL15-CCL14A0A0B4J2E2 113 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 GRM8O00222 908 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 WDHD1O75717 1129 aaPredicted RBP9.89□□□□□ -0.83
CLK1-215ENST00000621181 GYG1P46976 350 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 TNNI2P48788 182 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 GTF2A2P52657 109 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 VGLL4Q14135 290 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 CCL15Q16663 113 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 SLC4A8Q2Y0W8 1093 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 BEND3Q5T5X7 828 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 VPS37DQ86XT2 251 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 DZIP1LQ8IYY4 767 aaKnown RBP9.89□□□□□ -0.83
CLK1-215ENST00000621181 OTUD5Q96G74 571 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 TMEM39BQ9GZU3 492 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 ZFYVE28Q9HCC9 887 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 C9orf78Q9NZ63 289 aaPredicted RBP9.89□□□□□ -0.83
CLK1-215ENST00000621181 FAM205AQ6ZU69 1335 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 CEP290O15078 2479 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 ANP32CO43423 234 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 VAMP4O75379 141 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 MYCP01106 439 aaPredicted RBP9.89□□□□□ -0.83
CLK1-215ENST00000621181 HIBADHP31937 336 aaKnown RBP9.89□□□□□ -0.83
CLK1-215ENST00000621181 CAP1Q01518 475 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 UBE4AQ14139 1066 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 EPHA10Q5JZY3 1008 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.89□□□□□ -0.83
CLK1-215ENST00000621181 CDAN1Q8IWY9 1227 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 TDRD7Q8NHU6 1098 aaKnown RBP9.89□□□□□ -0.83
CLK1-215ENST00000621181 BRI3BPQ8WY22 251 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 ZNF333Q96JL9 665 aa9.89□□□□□ -0.83
CLK1-215ENST00000621181 FRAT2O75474 233 aaPredicted RBP9.88□□□□□ -0.83
CLK1-215ENST00000621181 CRKP46108 304 aa9.88□□□□□ -0.83
CLK1-215ENST00000621181 MAP3K9P80192 1104 aa9.88□□□□□ -0.83
CLK1-215ENST00000621181 TEPSINQ96N21 525 aa9.88□□□□□ -0.83
CLK1-215ENST00000621181 SALL2Q9Y467 1007 aaPredicted RBP9.88□□□□□ -0.83
CLK1-215ENST00000621181 PTCH2Q9Y6C5 1203 aa9.88□□□□□ -0.83
CLK1-215ENST00000621181 EXOSC9Q06265 439 aaKnown RBP9.87□□□□□ -0.83
CLK1-215ENST00000621181 KIF22Q14807 665 aa9.87□□□□□ -0.83
CLK1-215ENST00000621181 CCDC184Q52MB2 194 aa9.87□□□□□ -0.83
CLK1-215ENST00000621181 SLC4A10Q6U841 1118 aa9.87□□□□□ -0.83
CLK1-215ENST00000621181 FAM43AQ8N2R8 423 aa9.87□□□□□ -0.83
CLK1-215ENST00000621181 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.87□□□□□ -0.83
CLK1-215ENST00000621181 FAM84BQ96KN1 310 aaPredicted RBP9.87□□□□□ -0.83
CLK1-215ENST00000621181 CHAF1AQ13111 956 aaPredicted RBP9.86□□□□□ -0.83
CLK1-215ENST00000621181 CHRDL2Q6WN34 429 aa9.86□□□□□ -0.83
CLK1-215ENST00000621181 WRNIP1Q96S55 665 aa9.86□□□□□ -0.83
CLK1-215ENST00000621181 TMOD2Q9NZR1 351 aa9.86□□□□□ -0.83
CLK1-215ENST00000621181 IQSEC3Q9UPP2 1182 aaPredicted RBP9.86□□□□□ -0.83
CLK1-215ENST00000621181 SPDYE5A6NIY4 337 aa9.86□□□□□ -0.83
CLK1-215ENST00000621181 TLR2O60603 784 aa9.86□□□□□ -0.83
CLK1-215ENST00000621181 CETPP11597 493 aa9.86□□□□□ -0.83
CLK1-215ENST00000621181 FXR1P51114 621 aaKnown RBP eCLIP9.86□□□□□ -0.83
CLK1-215ENST00000621181 CACNB3P54284 484 aa9.86□□□□□ -0.83
CLK1-215ENST00000621181 CAVIN4Q5BKX8 364 aa9.86□□□□□ -0.83
CLK1-215ENST00000621181 TBC1D22AQ8WUA7 517 aa9.86□□□□□ -0.83
CLK1-215ENST00000621181 ARAP2Q8WZ64 1704 aa9.86□□□□□ -0.83
CLK1-215ENST00000621181 TEKT1Q969V4 418 aa9.86□□□□□ -0.83
CLK1-215ENST00000621181 PUS3Q9BZE2 481 aaKnown RBP9.86□□□□□ -0.83
CLK1-215ENST00000621181 TRIOBPQ9H2D6 2365 aa9.86□□□□□ -0.83
CLK1-215ENST00000621181 MROH5Q6ZUA9 1318 aa9.86□□□□□ -0.83
CLK1-215ENST00000621181 RANBP2P49792 3224 aaKnown RBP9.85□□□□□ -0.83
CLK1-215ENST00000621181 SZT2Q5T011 3432 aa9.85□□□□□ -0.83
CLK1-215ENST00000621181 IRF6O14896 467 aa9.85□□□□□ -0.83
CLK1-215ENST00000621181 LACTBP83111 547 aaPredicted RBP9.85□□□□□ -0.83
CLK1-215ENST00000621181 SNAPC2Q13487 334 aa9.85□□□□□ -0.83
CLK1-215ENST00000621181 ERO1BQ86YB8 467 aa9.85□□□□□ -0.83
CLK1-215ENST00000621181 WDR63Q8IWG1 891 aa9.85□□□□□ -0.83
CLK1-215ENST00000621181 SPDYE1Q8NFV5 336 aaPredicted RBP9.85□□□□□ -0.83
CLK1-215ENST00000621181 SH3TC2Q8TF17 1288 aa9.85□□□□□ -0.83
CLK1-215ENST00000621181 HOOK2Q96ED9 719 aa9.85□□□□□ -0.83
CLK1-215ENST00000621181 SRCIN1Q9C0H9 1055 aa9.85□□□□□ -0.83
CLK1-215ENST00000621181 COLQQ9Y215 455 aaPredicted RBP9.85□□□□□ -0.83
CLK1-215ENST00000621181 BTBD19C9JJ37 291 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms