RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ABHD8Q96I13 439 aa23.75■■□□□ 1.39
CCDC28A-203ENST00000617445 MEIS3Q99687 375 aa23.75■■□□□ 1.39
CCDC28A-203ENST00000617445 COPRSQ9NQ92 184 aa23.75■■□□□ 1.39
CCDC28A-203ENST00000617445 MAST3O60307 1309 aa23.75■■□□□ 1.39
CCDC28A-203ENST00000617445 TM4SF4P48230 202 aa23.74■■□□□ 1.39
CCDC28A-203ENST00000617445 PRKG1Q13976 671 aa23.74■■□□□ 1.39
CCDC28A-203ENST00000617445 RASA3Q14644 834 aa23.74■■□□□ 1.39
CCDC28A-203ENST00000617445 ATF7IPQ6VMQ6 1270 aa23.74■■□□□ 1.39
CCDC28A-203ENST00000617445 WDR66Q8TBY9 1149 aa23.74■■□□□ 1.39
CCDC28A-203ENST00000617445 TNNI2P48788 182 aa23.73■■□□□ 1.39
CCDC28A-203ENST00000617445 SREBF2Q12772 1141 aa23.73■■□□□ 1.39
CCDC28A-203ENST00000617445 TEKT1Q969V4 418 aa23.73■■□□□ 1.39
CCDC28A-203ENST00000617445 SLC10A4Q96EP9 437 aa23.73■■□□□ 1.39
CCDC28A-203ENST00000617445 SIL1Q9H173 461 aa23.73■■□□□ 1.39
CCDC28A-203ENST00000617445 TDRD3Q9H7E2 651 aaKnown RBP23.73■■□□□ 1.39
CCDC28A-203ENST00000617445 GNL3LQ9NVN8 582 aaKnown RBP23.73■■□□□ 1.39
CCDC28A-203ENST00000617445 ZBTB22O15209 634 aa23.72■■□□□ 1.39
CCDC28A-203ENST00000617445 IREB2P48200 963 aaKnown RBP23.72■■□□□ 1.39
CCDC28A-203ENST00000617445 HNRNPUQ00839 825 aaKnown RBP eCLIP23.72■■□□□ 1.39
CCDC28A-203ENST00000617445 ATP2B3Q16720 1220 aa23.72■■□□□ 1.39
CCDC28A-203ENST00000617445 NBPF12Q5TAG4 269 aaPredicted RBP23.72■■□□□ 1.39
CCDC28A-203ENST00000617445 MYH13Q9UKX3 1938 aa23.72■■□□□ 1.39
CCDC28A-203ENST00000617445 AOX1Q06278 1338 aa23.71■■□□□ 1.39
CCDC28A-203ENST00000617445 TRIM27P14373 513 aa23.71■■□□□ 1.39
CCDC28A-203ENST00000617445 INHBEP58166 350 aa23.71■■□□□ 1.39
CCDC28A-203ENST00000617445 MTX1Q13505 466 aa23.71■■□□□ 1.39
CCDC28A-203ENST00000617445 ZDHHC15Q96MV8 337 aa23.71■■□□□ 1.39
CCDC28A-203ENST00000617445 BCAR3O75815 825 aa23.7■■□□□ 1.38
CCDC28A-203ENST00000617445 GRIK5Q16478 980 aa23.7■■□□□ 1.38
CCDC28A-203ENST00000617445 SPRYD7Q5W111 196 aa23.7■■□□□ 1.38
CCDC28A-203ENST00000617445 HHIPL2Q6UWX4 724 aa23.7■■□□□ 1.38
CCDC28A-203ENST00000617445 FRAT1Q92837 279 aaPredicted RBP23.7■■□□□ 1.38
CCDC28A-203ENST00000617445 SEMA3EO15041 775 aa23.69■■□□□ 1.38
CCDC28A-203ENST00000617445 ZBTB48P10074 688 aaPredicted RBP23.69■■□□□ 1.38
CCDC28A-203ENST00000617445 FKBP1CQ5VVH2 108 aa23.69■■□□□ 1.38
CCDC28A-203ENST00000617445 SSC5DA1L4H1 1573 aa23.69■■□□□ 1.38
CCDC28A-203ENST00000617445 SRGAP3O43295 1099 aa23.68■■□□□ 1.38
CCDC28A-203ENST00000617445 USP2O75604 605 aaPredicted RBP23.68■■□□□ 1.38
CCDC28A-203ENST00000617445 GNAI2P04899 355 aa23.68■■□□□ 1.38
CCDC28A-203ENST00000617445 ZKSCAN2Q63HK3 967 aa23.68■■□□□ 1.38
CCDC28A-203ENST00000617445 ANKRD13AQ8IZ07 590 aa23.68■■□□□ 1.38
CCDC28A-203ENST00000617445 MCOLN1Q9GZU1 580 aa23.68■■□□□ 1.38
CCDC28A-203ENST00000617445 TMOD2Q9NZR1 351 aa23.68■■□□□ 1.38
CCDC28A-203ENST00000617445 PA2G4Q9UQ80 394 aaKnown RBP23.68■■□□□ 1.38
CCDC28A-203ENST00000617445 MANSC4A6NHS7 340 aaPredicted RBP23.67■■□□□ 1.38
CCDC28A-203ENST00000617445 ALDH1A1P00352 501 aa23.67■■□□□ 1.38
CCDC28A-203ENST00000617445 DGKZQ13574 1117 aa23.67■■□□□ 1.38
CCDC28A-203ENST00000617445 NOM1Q5C9Z4 860 aaKnown RBP23.67■■□□□ 1.38
CCDC28A-203ENST00000617445 DENND2AQ9ULE3 1009 aa23.67■■□□□ 1.38
CCDC28A-203ENST00000617445 AKAP2Q9Y2D5 859 aa23.67■■□□□ 1.38
CCDC28A-203ENST00000617445 TCP10L2B9ZVM9 353 aa23.66■■□□□ 1.38
CCDC28A-203ENST00000617445 FAM83AQ86UY5 434 aa23.66■■□□□ 1.38
CCDC28A-203ENST00000617445 HOOK2Q96ED9 719 aa23.66■■□□□ 1.38
CCDC28A-203ENST00000617445 TEPSINQ96N21 525 aa23.66■■□□□ 1.38
CCDC28A-203ENST00000617445 CFHR5Q9BXR6 569 aa23.66■■□□□ 1.38
CCDC28A-203ENST00000617445 FZD1Q9UP38 647 aa23.66■■□□□ 1.38
CCDC28A-203ENST00000617445 SALL1Q9NSC2 1324 aa23.65■■□□□ 1.38
CCDC28A-203ENST00000617445 MKRN3Q13064 507 aaKnown RBP23.65■■□□□ 1.38
CCDC28A-203ENST00000617445 APOBEC3HQ6NTF7 200 aaKnown RBP23.65■■□□□ 1.38
CCDC28A-203ENST00000617445 ZGPATQ8N5A5 531 aaKnown RBP23.64■■□□□ 1.37
CCDC28A-203ENST00000617445 CLUAP1Q96AJ1 413 aa23.64■■□□□ 1.37
CCDC28A-203ENST00000617445 WNK4Q96J92 1243 aa23.64■■□□□ 1.37
CCDC28A-203ENST00000617445 CLMNQ96JQ2 1002 aa23.64■■□□□ 1.37
CCDC28A-203ENST00000617445 LDHBP07195 334 aaKnown RBP23.63■■□□□ 1.37
CCDC28A-203ENST00000617445 TMEM39BQ9GZU3 492 aa23.63■■□□□ 1.37
CCDC28A-203ENST00000617445 TBC1D8O95759 1140 aa23.62■■□□□ 1.37
CCDC28A-203ENST00000617445 CCDC102BQ68D86 513 aa23.62■■□□□ 1.37
CCDC28A-203ENST00000617445 LAMB1P07942 1786 aa23.62■■□□□ 1.37
CCDC28A-203ENST00000617445 PDS5AQ29RF7 1337 aaKnown RBP23.61■■□□□ 1.37
CCDC28A-203ENST00000617445 ZBED9Q6R2W3 1325 aa23.61■■□□□ 1.37
CCDC28A-203ENST00000617445 CCDC85CA6NKD9 419 aa23.61■■□□□ 1.37
CCDC28A-203ENST00000617445 PHKA1P46020 1223 aa23.61■■□□□ 1.37
CCDC28A-203ENST00000617445 CTU1Q7Z7A3 348 aaKnown RBP23.61■■□□□ 1.37
CCDC28A-203ENST00000617445 TIMM10P62072 90 aa23.6■■□□□ 1.37
CCDC28A-203ENST00000617445 MAP3K9P80192 1104 aa23.6■■□□□ 1.37
CCDC28A-203ENST00000617445 MVPQ14764 893 aaKnown RBP23.6■■□□□ 1.37
CCDC28A-203ENST00000617445 OTUD7BQ6GQQ9 843 aa23.6■■□□□ 1.37
CCDC28A-203ENST00000617445 TMEM57Q8N5G2 664 aa23.6■■□□□ 1.37
CCDC28A-203ENST00000617445 TNNQ9UQP3 1299 aa23.6■■□□□ 1.37
CCDC28A-203ENST00000617445 A0A1B0GUL7 405 aa23.59■■□□□ 1.37
CCDC28A-203ENST00000617445 GPR25O00155 361 aa23.59■■□□□ 1.37
CCDC28A-203ENST00000617445 TFCP2Q12800 502 aa23.59■■□□□ 1.37
CCDC28A-203ENST00000617445 G3BP1Q13283 466 aaKnown RBP eCLIP23.59■■□□□ 1.37
CCDC28A-203ENST00000617445 PKN2Q16513 984 aaKnown RBP23.59■■□□□ 1.37
CCDC28A-203ENST00000617445 IFNL1Q8IU54 200 aa23.59■■□□□ 1.37
CCDC28A-203ENST00000617445 FTSJ3Q8IY81 847 aaKnown RBP23.59■■□□□ 1.37
CCDC28A-203ENST00000617445 CSADQ9Y600 493 aa23.59■■□□□ 1.37
CCDC28A-203ENST00000617445 RPAP1Q9BWH6 1393 aaPredicted RBP23.59■■□□□ 1.37
CCDC28A-203ENST00000617445 PRDX5P30044 214 aa23.58■■□□□ 1.37
CCDC28A-203ENST00000617445 ADORA1P30542 326 aa23.58■■□□□ 1.37
CCDC28A-203ENST00000617445 CACNB3P54284 484 aa23.58■■□□□ 1.37
CCDC28A-203ENST00000617445 SPTY2D1Q68D10 685 aaPredicted RBP23.58■■□□□ 1.37
CCDC28A-203ENST00000617445 SLF2Q8IX21 1173 aa23.58■■□□□ 1.37
CCDC28A-203ENST00000617445 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.58■■□□□ 1.37
CCDC28A-203ENST00000617445 ZNF296Q8WUU4 475 aaPredicted RBP23.58■■□□□ 1.37
CCDC28A-203ENST00000617445 XAGE2Q96GT9 111 aa23.58■■□□□ 1.37
CCDC28A-203ENST00000617445 DAGLAQ9Y4D2 1042 aa23.58■■□□□ 1.37
CCDC28A-203ENST00000617445 DCAF15Q66K64 600 aa23.57■■□□□ 1.36
CCDC28A-203ENST00000617445 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.57■■□□□ 1.36
CCDC28A-203ENST00000617445 CDAN1Q8IWY9 1227 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms