RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TESPA1A2RU30 521 aaPredicted RBP26.51■■□□□ 1.83
VPS53-216ENST00000574029 GRIK5Q16478 980 aa26.51■■□□□ 1.83
VPS53-216ENST00000574029 METTL24Q5JXM2 366 aa26.51■■□□□ 1.83
VPS53-216ENST00000574029 VPS37DQ86XT2 251 aa26.51■■□□□ 1.83
VPS53-216ENST00000574029 PDE8BO95263 885 aa26.5■■□□□ 1.83
VPS53-216ENST00000574029 HDLBPQ00341 1268 aaKnown RBP26.5■■□□□ 1.83
VPS53-216ENST00000574029 CAVIN4Q5BKX8 364 aa26.5■■□□□ 1.83
VPS53-216ENST00000574029 IQSEC3Q9UPP2 1182 aaPredicted RBP26.5■■□□□ 1.83
VPS53-216ENST00000574029 TNNI2P48788 182 aa26.49■■□□□ 1.83
VPS53-216ENST00000574029 OTUD7BQ6GQQ9 843 aa26.49■■□□□ 1.83
VPS53-216ENST00000574029 CDAN1Q8IWY9 1227 aa26.49■■□□□ 1.83
VPS53-216ENST00000574029 TBC1D22AQ8WUA7 517 aa26.49■■□□□ 1.83
VPS53-216ENST00000574029 USP44Q9H0E7 712 aa26.49■■□□□ 1.83
VPS53-216ENST00000574029 TCP10L2B9ZVM9 353 aa26.48■■□□□ 1.83
VPS53-216ENST00000574029 SSH1Q8WYL5 1049 aa26.48■■□□□ 1.83
VPS53-216ENST00000574029 OPTNQ96CV9 577 aa26.48■■□□□ 1.83
VPS53-216ENST00000574029 PTPN18Q99952 460 aa26.48■■□□□ 1.83
VPS53-216ENST00000574029 TMEM39BQ9GZU3 492 aa26.48■■□□□ 1.83
VPS53-216ENST00000574029 ELP3Q9H9T3 547 aa26.48■■□□□ 1.83
VPS53-216ENST00000574029 E9PSI1 815 aa26.47■■□□□ 1.83
VPS53-216ENST00000574029 CHAF1AQ13111 956 aaPredicted RBP26.47■■□□□ 1.83
VPS53-216ENST00000574029 CRHR2Q13324 411 aa26.47■■□□□ 1.83
VPS53-216ENST00000574029 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.47■■□□□ 1.83
VPS53-216ENST00000574029 OTOP1Q7RTM1 612 aa26.47■■□□□ 1.83
VPS53-216ENST00000574029 KLHDC4Q8TBB5 520 aa26.47■■□□□ 1.83
VPS53-216ENST00000574029 TRIM17Q9Y577 477 aa26.47■■□□□ 1.83
VPS53-216ENST00000574029 MRIQ9BWK5 157 aa26.46■■□□□ 1.83
VPS53-216ENST00000574029 PCDH10Q9P2E7 1040 aa26.46■■□□□ 1.83
VPS53-216ENST00000574029 PDE4DIPQ5VU43 2346 aa26.46■■□□□ 1.83
VPS53-216ENST00000574029 KIF16BQ96L93 1317 aa26.45■■□□□ 1.83
VPS53-216ENST00000574029 FRAT2O75474 233 aaPredicted RBP26.45■■□□□ 1.82
VPS53-216ENST00000574029 TEKT1Q969V4 418 aa26.45■■□□□ 1.82
VPS53-216ENST00000574029 ERO1AQ96HE7 468 aa26.45■■□□□ 1.82
VPS53-216ENST00000574029 MS4A4AQ96JQ5 239 aa26.45■■□□□ 1.82
VPS53-216ENST00000574029 FGFR2P21802 821 aa26.44■■□□□ 1.82
VPS53-216ENST00000574029 BCAMP50895 628 aa26.44■■□□□ 1.82
VPS53-216ENST00000574029 MAP3K9P80192 1104 aa26.44■■□□□ 1.82
VPS53-216ENST00000574029 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.44■■□□□ 1.82
VPS53-216ENST00000574029 SLFN5Q08AF3 891 aa26.43■■□□□ 1.82
VPS53-216ENST00000574029 VGLL4Q14135 290 aa26.43■■□□□ 1.82
VPS53-216ENST00000574029 PUM3Q15397 648 aaKnown RBP26.43■■□□□ 1.82
VPS53-216ENST00000574029 PRPF38BQ5VTL8 546 aaKnown RBP26.43■■□□□ 1.82
VPS53-216ENST00000574029 ZDHHC15Q96MV8 337 aa26.43■■□□□ 1.82
VPS53-216ENST00000574029 SUGT1Q9Y2Z0 365 aa26.43■■□□□ 1.82
VPS53-216ENST00000574029 RFX5P48382 616 aaPredicted RBP26.42■■□□□ 1.82
VPS53-216ENST00000574029 CD99L2Q8TCZ2 262 aa26.42■■□□□ 1.82
VPS53-216ENST00000574029 CNKSR2Q8WXI2 1034 aa26.42■■□□□ 1.82
VPS53-216ENST00000574029 MYH13Q9UKX3 1938 aa26.41■■□□□ 1.82
VPS53-216ENST00000574029 IFIT1P09914 478 aaKnown RBP26.41■■□□□ 1.82
VPS53-216ENST00000574029 CACNB3P54284 484 aa26.41■■□□□ 1.82
VPS53-216ENST00000574029 ALDH1L2Q3SY69 923 aa26.41■■□□□ 1.82
VPS53-216ENST00000574029 PTPN22Q9Y2R2 807 aa26.41■■□□□ 1.82
VPS53-216ENST00000574029 MAST3O60307 1309 aa26.4■■□□□ 1.82
VPS53-216ENST00000574029 EYA2O00167 538 aa26.4■■□□□ 1.82
VPS53-216ENST00000574029 SP3Q02447 781 aa26.4■■□□□ 1.82
VPS53-216ENST00000574029 FKBP1CQ5VVH2 108 aa26.4■■□□□ 1.82
VPS53-216ENST00000574029 INTS3Q68E01 1043 aaKnown RBP26.4■■□□□ 1.82
VPS53-216ENST00000574029 APOBEC3HQ6NTF7 200 aaKnown RBP26.4■■□□□ 1.82
VPS53-216ENST00000574029 FAM83AQ86UY5 434 aa26.4■■□□□ 1.82
VPS53-216ENST00000574029 BRI3BPQ8WY22 251 aa26.4■■□□□ 1.82
VPS53-216ENST00000574029 CSADQ9Y600 493 aa26.4■■□□□ 1.82
VPS53-216ENST00000574029 GTF2A2P52657 109 aa26.39■■□□□ 1.82
VPS53-216ENST00000574029 RBBP6Q7Z6E9 1792 aaKnown RBP26.38■■□□□ 1.81
VPS53-216ENST00000574029 CCL15-CCL14A0A0B4J2E2 113 aa26.38■■□□□ 1.81
VPS53-216ENST00000574029 CCL15Q16663 113 aa26.38■■□□□ 1.81
VPS53-216ENST00000574029 HHIPL2Q6UWX4 724 aa26.38■■□□□ 1.81
VPS53-216ENST00000574029 EFCC1Q9HA90 598 aa26.38■■□□□ 1.81
VPS53-216ENST00000574029 TMOD2Q9NZR1 351 aa26.38■■□□□ 1.81
VPS53-216ENST00000574029 SPDYE5A6NIY4 337 aa26.37■■□□□ 1.81
VPS53-216ENST00000574029 CAP1Q01518 475 aa26.37■■□□□ 1.81
VPS53-216ENST00000574029 LPIN2Q92539 896 aa26.37■■□□□ 1.81
VPS53-216ENST00000574029 OTUD5Q96G74 571 aa26.37■■□□□ 1.81
VPS53-216ENST00000574029 RPAP1Q9BWH6 1393 aaPredicted RBP26.36■■□□□ 1.81
VPS53-216ENST00000574029 SLC5A1P13866 664 aa26.36■■□□□ 1.81
VPS53-216ENST00000574029 ATG9AQ7Z3C6 839 aa26.36■■□□□ 1.81
VPS53-216ENST00000574029 WDR66Q8TBY9 1149 aa26.36■■□□□ 1.81
VPS53-216ENST00000574029 HOOK2Q96ED9 719 aa26.36■■□□□ 1.81
VPS53-216ENST00000574029 SNCAIPQ9Y6H5 919 aa26.36■■□□□ 1.81
VPS53-216ENST00000574029 TAF1CQ15572 869 aaPredicted RBP26.35■■□□□ 1.81
VPS53-216ENST00000574029 CDCA7LQ96GN5 454 aa26.35■■□□□ 1.81
VPS53-216ENST00000574029 ZFYVE28Q9HCC9 887 aa26.35■■□□□ 1.81
VPS53-216ENST00000574029 SMC4Q9NTJ3 1288 aa26.35■■□□□ 1.81
VPS53-216ENST00000574029 ERO1BQ86YB8 467 aa26.34■■□□□ 1.81
VPS53-216ENST00000574029 TRMT2AQ8IZ69 625 aaKnown RBP26.34■■□□□ 1.81
VPS53-216ENST00000574029 FAM43AQ8N2R8 423 aa26.34■■□□□ 1.81
VPS53-216ENST00000574029 ARMC5Q96C12 935 aa26.34■■□□□ 1.81
VPS53-216ENST00000574029 WRNIP1Q96S55 665 aa26.34■■□□□ 1.81
VPS53-216ENST00000574029 FBXO3Q9UK99 471 aa26.34■■□□□ 1.81
VPS53-216ENST00000574029 HTTP42858 3142 aa26.33■■□□□ 1.81
VPS53-216ENST00000574029 POTEFA5A3E0 1075 aa26.33■■□□□ 1.81
VPS53-216ENST00000574029 DCAF15Q66K64 600 aa26.32■■□□□ 1.8
VPS53-216ENST00000574029 ZKSCAN4Q969J2 545 aaPredicted RBP26.32■■□□□ 1.8
VPS53-216ENST00000574029 CIAO1O76071 339 aa26.31■■□□□ 1.8
VPS53-216ENST00000574029 CETPP11597 493 aa26.31■■□□□ 1.8
VPS53-216ENST00000574029 ZCCHC17Q9NP64 241 aaKnown RBP26.31■■□□□ 1.8
VPS53-216ENST00000574029 UBTFL1P0CB47 393 aaPredicted RBP26.3■■□□□ 1.8
VPS53-216ENST00000574029 PPIL2Q13356 520 aa26.3■■□□□ 1.8
VPS53-216ENST00000574029 ARHGEF6Q15052 776 aa26.3■■□□□ 1.8
VPS53-216ENST00000574029 FAM151AQ8WW52 585 aa26.3■■□□□ 1.8
VPS53-216ENST00000574029 IRF6O14896 467 aa26.29■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms