RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 KLHDC4Q8TBB5 520 aa21.49■■□□□ 1.03
CLN3-216ENST00000565316 TBC1D22AQ8WUA7 517 aa21.49■■□□□ 1.03
CLN3-216ENST00000565316 TDRD3Q9H7E2 651 aaKnown RBP21.49■■□□□ 1.03
CLN3-216ENST00000565316 ARAP2Q8WZ64 1704 aa21.49■■□□□ 1.03
CLN3-216ENST00000565316 FGFR2P21802 821 aa21.48■■□□□ 1.03
CLN3-216ENST00000565316 TEPSINQ96N21 525 aa21.48■■□□□ 1.03
CLN3-216ENST00000565316 IQSEC3Q9UPP2 1182 aaPredicted RBP21.48■■□□□ 1.03
CLN3-216ENST00000565316 CT47B1P0C2W7 299 aaPredicted RBP21.47■■□□□ 1.03
CLN3-216ENST00000565316 BCAMP50895 628 aa21.47■■□□□ 1.03
CLN3-216ENST00000565316 IFNL1Q8IU54 200 aa21.47■■□□□ 1.03
CLN3-216ENST00000565316 MRIQ9BWK5 157 aa21.47■■□□□ 1.03
CLN3-216ENST00000565316 HPS5Q9UPZ3 1129 aa21.47■■□□□ 1.03
CLN3-216ENST00000565316 FKTNO75072 461 aa21.46■■□□□ 1.03
CLN3-216ENST00000565316 CHAF1AQ13111 956 aaPredicted RBP21.46■■□□□ 1.03
CLN3-216ENST00000565316 PUM3Q15397 648 aaKnown RBP21.46■■□□□ 1.03
CLN3-216ENST00000565316 ANKRD13AQ8IZ07 590 aa21.46■■□□□ 1.03
CLN3-216ENST00000565316 SMC4Q9NTJ3 1288 aa21.46■■□□□ 1.03
CLN3-216ENST00000565316 EYA2O00167 538 aa21.45■■□□□ 1.02
CLN3-216ENST00000565316 IGF2BP3O00425 579 aaKnown RBP eCLIP21.45■■□□□ 1.02
CLN3-216ENST00000565316 GJA5P36382 358 aa21.45■■□□□ 1.02
CLN3-216ENST00000565316 SUGT1Q9Y2Z0 365 aa21.45■■□□□ 1.02
CLN3-216ENST00000565316 LAMB1P07942 1786 aa21.45■■□□□ 1.02
CLN3-216ENST00000565316 FRAT2O75474 233 aaPredicted RBP21.44■■□□□ 1.02
CLN3-216ENST00000565316 IFIT1P09914 478 aaKnown RBP21.44■■□□□ 1.02
CLN3-216ENST00000565316 CDAN1Q8IWY9 1227 aa21.44■■□□□ 1.02
CLN3-216ENST00000565316 TESPA1A2RU30 521 aaPredicted RBP21.43■■□□□ 1.02
CLN3-216ENST00000565316 TCP10L2B9ZVM9 353 aa21.43■■□□□ 1.02
CLN3-216ENST00000565316 TNNI2P48788 182 aa21.43■■□□□ 1.02
CLN3-216ENST00000565316 SOX10P56693 466 aa21.43■■□□□ 1.02
CLN3-216ENST00000565316 ATG9AQ7Z3C6 839 aa21.43■■□□□ 1.02
CLN3-216ENST00000565316 TEKT1Q969V4 418 aa21.43■■□□□ 1.02
CLN3-216ENST00000565316 ZDHHC15Q96MV8 337 aa21.43■■□□□ 1.02
CLN3-216ENST00000565316 TMEM39BQ9GZU3 492 aa21.43■■□□□ 1.02
CLN3-216ENST00000565316 FBXO46Q6PJ61 603 aaPredicted RBP21.42■■□□□ 1.02
CLN3-216ENST00000565316 LPIN2Q92539 896 aa21.42■■□□□ 1.02
CLN3-216ENST00000565316 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.42■■□□□ 1.02
CLN3-216ENST00000565316 FBXO3Q9UK99 471 aa21.42■■□□□ 1.02
CLN3-216ENST00000565316 FKBP1CQ5VVH2 108 aa21.41■■□□□ 1.02
CLN3-216ENST00000565316 APOBEC3HQ6NTF7 200 aaKnown RBP21.41■■□□□ 1.02
CLN3-216ENST00000565316 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.41■■□□□ 1.02
CLN3-216ENST00000565316 NOB1Q9ULX3 412 aaKnown RBP21.41■■□□□ 1.02
CLN3-216ENST00000565316 CIAO1O76071 339 aa21.4■■□□□ 1.02
CLN3-216ENST00000565316 UBTFL1P0CB47 393 aaPredicted RBP21.4■■□□□ 1.02
CLN3-216ENST00000565316 SLC5A1P13866 664 aa21.4■■□□□ 1.02
CLN3-216ENST00000565316 HHIPL2Q6UWX4 724 aa21.4■■□□□ 1.02
CLN3-216ENST00000565316 PTPN18Q99952 460 aa21.4■■□□□ 1.02
CLN3-216ENST00000565316 ELP3Q9H9T3 547 aa21.4■■□□□ 1.02
CLN3-216ENST00000565316 MAST3O60307 1309 aa21.4■■□□□ 1.02
CLN3-216ENST00000565316 CCER2I3L3R5 266 aa21.39■■□□□ 1.01
CLN3-216ENST00000565316 MAP3K9P80192 1104 aa21.39■■□□□ 1.01
CLN3-216ENST00000565316 OTUD7BQ6GQQ9 843 aa21.39■■□□□ 1.01
CLN3-216ENST00000565316 FAM83AQ86UY5 434 aa21.39■■□□□ 1.01
CLN3-216ENST00000565316 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.39■■□□□ 1.01
CLN3-216ENST00000565316 OPTNQ96CV9 577 aa21.39■■□□□ 1.01
CLN3-216ENST00000565316 API5Q9BZZ5 524 aaKnown RBP21.39■■□□□ 1.01
CLN3-216ENST00000565316 OTOFQ9HC10 1997 aa21.38■■□□□ 1.01
CLN3-216ENST00000565316 CACNB3P54284 484 aa21.38■■□□□ 1.01
CLN3-216ENST00000565316 WDR66Q8TBY9 1149 aa21.38■■□□□ 1.01
CLN3-216ENST00000565316 MS4A4AQ96JQ5 239 aa21.38■■□□□ 1.01
CLN3-216ENST00000565316 PDE4DIPQ5VU43 2346 aa21.38■■□□□ 1.01
CLN3-216ENST00000565316 VGLL4Q14135 290 aa21.37■■□□□ 1.01
CLN3-216ENST00000565316 HDAC5Q9UQL6 1122 aa21.37■■□□□ 1.01
CLN3-216ENST00000565316 ZBTB22O15209 634 aa21.36■■□□□ 1.01
CLN3-216ENST00000565316 CRHR2Q13324 411 aa21.36■■□□□ 1.01
CLN3-216ENST00000565316 CNKSR2Q8WXI2 1034 aa21.36■■□□□ 1.01
CLN3-216ENST00000565316 TMOD2Q9NZR1 351 aa21.36■■□□□ 1.01
CLN3-216ENST00000565316 CEP126Q9P2H0 1117 aa21.36■■□□□ 1.01
CLN3-216ENST00000565316 HTTP42858 3142 aa21.36■■□□□ 1.01
CLN3-216ENST00000565316 RARSP54136 660 aaKnown RBP21.35■■□□□ 1.01
CLN3-216ENST00000565316 ATP2B3Q16720 1220 aa21.35■■□□□ 1.01
CLN3-216ENST00000565316 OTOP1Q7RTM1 612 aa21.35■■□□□ 1.01
CLN3-216ENST00000565316 ARHGAP45Q92619 1136 aa21.35■■□□□ 1.01
CLN3-216ENST00000565316 SIL1Q9H173 461 aa21.35■■□□□ 1.01
CLN3-216ENST00000565316 CSADQ9Y600 493 aa21.35■■□□□ 1.01
CLN3-216ENST00000565316 LRRFIP2Q9Y608 721 aaKnown RBP21.35■■□□□ 1.01
CLN3-216ENST00000565316 RPAP1Q9BWH6 1393 aaPredicted RBP21.34■■□□□ 1.01
CLN3-216ENST00000565316 IL15P40933 162 aaPredicted RBP21.34■■□□□ 1.01
CLN3-216ENST00000565316 GTF2A2P52657 109 aa21.34■■□□□ 1.01
CLN3-216ENST00000565316 BRI3BPQ8WY22 251 aa21.34■■□□□ 1.01
CLN3-216ENST00000565316 HOOK2Q96ED9 719 aa21.34■■□□□ 1.01
CLN3-216ENST00000565316 COPRSQ9NQ92 184 aa21.34■■□□□ 1.01
CLN3-216ENST00000565316 SPDYE5A6NIY4 337 aa21.33■■□□□ 1.01
CLN3-216ENST00000565316 ERO1AQ96HE7 468 aa21.33■■□□□ 1.01
CLN3-216ENST00000565316 GNL3LQ9NVN8 582 aaKnown RBP21.33■■□□□ 1.01
CLN3-216ENST00000565316 TRIM17Q9Y577 477 aa21.33■■□□□ 1.01
CLN3-216ENST00000565316 SNCAIPQ9Y6H5 919 aa21.33■■□□□ 1.01
CLN3-216ENST00000565316 SALL1Q9NSC2 1324 aa21.32■■□□□ 1
CLN3-216ENST00000565316 INTS3Q68E01 1043 aaKnown RBP21.32■■□□□ 1
CLN3-216ENST00000565316 MEIS3Q99687 375 aa21.32■■□□□ 1
CLN3-216ENST00000565316 DAGLAQ9Y4D2 1042 aa21.32■■□□□ 1
CLN3-216ENST00000565316 CCL15-CCL14A0A0B4J2E2 113 aa21.31■■□□□ 1
CLN3-216ENST00000565316 SEMA3EO15041 775 aa21.31■■□□□ 1
CLN3-216ENST00000565316 CCL15Q16663 113 aa21.31■■□□□ 1
CLN3-216ENST00000565316 ERO1BQ86YB8 467 aa21.31■■□□□ 1
CLN3-216ENST00000565316 OTUD5Q96G74 571 aa21.31■■□□□ 1
CLN3-216ENST00000565316 PA2G4Q9UQ80 394 aaKnown RBP21.31■■□□□ 1
CLN3-216ENST00000565316 PRDX5P30044 214 aa21.3■■□□□ 1
CLN3-216ENST00000565316 SP3Q02447 781 aa21.3■■□□□ 1
CLN3-216ENST00000565316 DIXDC1Q155Q3 683 aa21.3■■□□□ 1
CLN3-216ENST00000565316 DCAF15Q66K64 600 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 121.7 ms