RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.36■□□□□ 0.85
VPS29-207ENST00000549970 ZNF70Q9UC06 446 aaPredicted RBP20.36■□□□□ 0.85
VPS29-207ENST00000549970 FBXO3Q9UK99 471 aa20.36■□□□□ 0.85
VPS29-207ENST00000549970 TNNQ9UQP3 1299 aa20.36■□□□□ 0.85
VPS29-207ENST00000549970 IPO8O15397 1037 aaKnown RBP20.35■□□□□ 0.85
VPS29-207ENST00000549970 CIAO1O76071 339 aa20.35■□□□□ 0.85
VPS29-207ENST00000549970 NBPF12Q5TAG4 269 aaPredicted RBP20.35■□□□□ 0.85
VPS29-207ENST00000549970 CEP126Q9P2H0 1117 aa20.35■□□□□ 0.85
VPS29-207ENST00000549970 MYH13Q9UKX3 1938 aa20.35■□□□□ 0.85
VPS29-207ENST00000549970 PPP1R12BO60237 982 aaPredicted RBP20.34■□□□□ 0.85
VPS29-207ENST00000549970 GNAI3P08754 354 aa20.34■□□□□ 0.85
VPS29-207ENST00000549970 TNFAIP1Q13829 316 aa20.34■□□□□ 0.85
VPS29-207ENST00000549970 ATP2B3Q16720 1220 aa20.34■□□□□ 0.85
VPS29-207ENST00000549970 SUPT20HL1Q3ZLR7 823 aa20.34■□□□□ 0.85
VPS29-207ENST00000549970 LDLRAD1Q5T700 205 aa20.34■□□□□ 0.85
VPS29-207ENST00000549970 ATF7IPQ6VMQ6 1270 aa20.34■□□□□ 0.85
VPS29-207ENST00000549970 TCP10L2B9ZVM9 353 aa20.33■□□□□ 0.85
VPS29-207ENST00000549970 IL15P40933 162 aaPredicted RBP20.33■□□□□ 0.85
VPS29-207ENST00000549970 MAP3K11Q16584 847 aa20.33■□□□□ 0.85
VPS29-207ENST00000549970 TEKT1Q969V4 418 aa20.33■□□□□ 0.85
VPS29-207ENST00000549970 CLUAP1Q96AJ1 413 aa20.33■□□□□ 0.85
VPS29-207ENST00000549970 MCOLN1Q9GZU1 580 aa20.32■□□□□ 0.84
VPS29-207ENST00000549970 COPRSQ9NQ92 184 aa20.32■□□□□ 0.84
VPS29-207ENST00000549970 SRGAP3O43295 1099 aa20.31■□□□□ 0.84
VPS29-207ENST00000549970 HDLBPQ00341 1268 aaKnown RBP20.31■□□□□ 0.84
VPS29-207ENST00000549970 DGKZQ13574 1117 aa20.31■□□□□ 0.84
VPS29-207ENST00000549970 SPRYD7Q5W111 196 aa20.31■□□□□ 0.84
VPS29-207ENST00000549970 CLMNQ96JQ2 1002 aa20.31■□□□□ 0.84
VPS29-207ENST00000549970 MAST3O60307 1309 aa20.3■□□□□ 0.84
VPS29-207ENST00000549970 TNNI2P48788 182 aa20.3■□□□□ 0.84
VPS29-207ENST00000549970 SREBF2Q12772 1141 aa20.3■□□□□ 0.84
VPS29-207ENST00000549970 CDAN1Q8IWY9 1227 aa20.3■□□□□ 0.84
VPS29-207ENST00000549970 WDR66Q8TBY9 1149 aa20.3■□□□□ 0.84
VPS29-207ENST00000549970 SLC10A4Q96EP9 437 aa20.3■□□□□ 0.84
VPS29-207ENST00000549970 SUGT1Q9Y2Z0 365 aa20.3■□□□□ 0.84
VPS29-207ENST00000549970 USP2O75604 605 aaPredicted RBP20.29■□□□□ 0.84
VPS29-207ENST00000549970 IREB2P48200 963 aaKnown RBP20.29■□□□□ 0.84
VPS29-207ENST00000549970 TM4SF4P48230 202 aa20.29■□□□□ 0.84
VPS29-207ENST00000549970 CACNB3P54284 484 aa20.29■□□□□ 0.84
VPS29-207ENST00000549970 TMEM39BQ9GZU3 492 aa20.29■□□□□ 0.84
VPS29-207ENST00000549970 GNL3LQ9NVN8 582 aaKnown RBP20.29■□□□□ 0.84
VPS29-207ENST00000549970 CCDC85CA6NKD9 419 aa20.28■□□□□ 0.84
VPS29-207ENST00000549970 TBC1D8O95759 1140 aa20.28■□□□□ 0.84
VPS29-207ENST00000549970 GNAI2P04899 355 aa20.28■□□□□ 0.84
VPS29-207ENST00000549970 ADORA1P30542 326 aa20.28■□□□□ 0.84
VPS29-207ENST00000549970 PHKA1P46020 1223 aa20.28■□□□□ 0.84
VPS29-207ENST00000549970 ZKSCAN2Q63HK3 967 aa20.28■□□□□ 0.84
VPS29-207ENST00000549970 TMEM57Q8N5G2 664 aa20.28■□□□□ 0.84
VPS29-207ENST00000549970 WNK4Q96J92 1243 aa20.28■□□□□ 0.84
VPS29-207ENST00000549970 ZDHHC15Q96MV8 337 aa20.28■□□□□ 0.84
VPS29-207ENST00000549970 TEPSINQ96N21 525 aa20.28■□□□□ 0.84
VPS29-207ENST00000549970 MTX1Q13505 466 aa20.27■□□□□ 0.84
VPS29-207ENST00000549970 APOBEC3HQ6NTF7 200 aaKnown RBP20.27■□□□□ 0.84
VPS29-207ENST00000549970 MRIQ9BWK5 157 aa20.27■□□□□ 0.84
VPS29-207ENST00000549970 TMOD2Q9NZR1 351 aa20.27■□□□□ 0.84
VPS29-207ENST00000549970 PRDX5P30044 214 aa20.26■□□□□ 0.83
VPS29-207ENST00000549970 HHIPL2Q6UWX4 724 aa20.26■□□□□ 0.83
VPS29-207ENST00000549970 ANKRD13AQ8IZ07 590 aa20.26■□□□□ 0.83
VPS29-207ENST00000549970 DENND2AQ9ULE3 1009 aa20.26■□□□□ 0.83
VPS29-207ENST00000549970 OTOFQ9HC10 1997 aa20.26■□□□□ 0.83
VPS29-207ENST00000549970 UNCXA6NJT0 531 aa20.25■□□□□ 0.83
VPS29-207ENST00000549970 ZBTB48P10074 688 aaPredicted RBP20.25■□□□□ 0.83
VPS29-207ENST00000549970 TIMM10P62072 90 aa20.25■□□□□ 0.83
VPS29-207ENST00000549970 TFCP2Q12800 502 aa20.25■□□□□ 0.83
VPS29-207ENST00000549970 CCDC102BQ68D86 513 aa20.25■□□□□ 0.83
VPS29-207ENST00000549970 MANSC4A6NHS7 340 aaPredicted RBP20.24■□□□□ 0.83
VPS29-207ENST00000549970 DIXDC1Q155Q3 683 aa20.24■□□□□ 0.83
VPS29-207ENST00000549970 ELP3Q9H9T3 547 aa20.24■□□□□ 0.83
VPS29-207ENST00000549970 ZBED9Q6R2W3 1325 aa20.24■□□□□ 0.83
VPS29-207ENST00000549970 PNMA6EA0A0J9YXQ4 647 aa20.23■□□□□ 0.83
VPS29-207ENST00000549970 A0A1B0GUL7 405 aa20.23■□□□□ 0.83
VPS29-207ENST00000549970 SEMA3EO15041 775 aa20.23■□□□□ 0.83
VPS29-207ENST00000549970 LDHBP07195 334 aaKnown RBP20.23■□□□□ 0.83
VPS29-207ENST00000549970 GJA5P36382 358 aa20.23■□□□□ 0.83
VPS29-207ENST00000549970 FTSJ3Q8IY81 847 aaKnown RBP20.23■□□□□ 0.83
VPS29-207ENST00000549970 AKAP2Q9Y2D5 859 aa20.23■□□□□ 0.83
VPS29-207ENST00000549970 DAGLAQ9Y4D2 1042 aa20.23■□□□□ 0.83
VPS29-207ENST00000549970 FAM83AQ86UY5 434 aa20.22■□□□□ 0.83
VPS29-207ENST00000549970 ZNF296Q8WUU4 475 aaPredicted RBP20.22■□□□□ 0.83
VPS29-207ENST00000549970 XAGE2Q96GT9 111 aa20.22■□□□□ 0.83
VPS29-207ENST00000549970 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.22■□□□□ 0.83
VPS29-207ENST00000549970 SALL1Q9NSC2 1324 aa20.22■□□□□ 0.83
VPS29-207ENST00000549970 GPR25O00155 361 aa20.21■□□□□ 0.83
VPS29-207ENST00000549970 INHBEP58166 350 aa20.21■□□□□ 0.83
VPS29-207ENST00000549970 RASGRF1Q13972 1273 aa20.21■□□□□ 0.83
VPS29-207ENST00000549970 FKBP1CQ5VVH2 108 aa20.21■□□□□ 0.83
VPS29-207ENST00000549970 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.21■□□□□ 0.83
VPS29-207ENST00000549970 CTU1Q7Z7A3 348 aaKnown RBP20.21■□□□□ 0.83
VPS29-207ENST00000549970 IFNL1Q8IU54 200 aa20.21■□□□□ 0.83
VPS29-207ENST00000549970 OPTNQ96CV9 577 aa20.21■□□□□ 0.83
VPS29-207ENST00000549970 NEUROD6Q96NK8 337 aa20.21■□□□□ 0.83
VPS29-207ENST00000549970 R3HDMLQ9H3Y0 253 aa20.21■□□□□ 0.83
VPS29-207ENST00000549970 ALDH1A1P00352 501 aa20.2■□□□□ 0.82
VPS29-207ENST00000549970 MAP3K9P80192 1104 aa20.2■□□□□ 0.82
VPS29-207ENST00000549970 G3BP1Q13283 466 aaKnown RBP eCLIP20.2■□□□□ 0.82
VPS29-207ENST00000549970 VGLL4Q14135 290 aa20.2■□□□□ 0.82
VPS29-207ENST00000549970 MVPQ14764 893 aaKnown RBP20.2■□□□□ 0.82
VPS29-207ENST00000549970 CDC42EP5Q6NZY7 148 aa20.2■□□□□ 0.82
VPS29-207ENST00000549970 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.2■□□□□ 0.82
VPS29-207ENST00000549970 CSADQ9Y600 493 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms