RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CHRNEQ04844 493 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 DNM1Q05193 864 aaKnown RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 PTPN12Q05209 780 aaKnown RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 SOX4Q06945 474 aaPredicted RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 PDE4BQ07343 736 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 DUSP4Q13115 394 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 PTK7Q13308 1070 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 IRF5Q13568 498 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 SETDB1Q15047 1291 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 CCDC27Q2M243 656 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 FOXD4L6Q3SYB3 417 aaPredicted RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZNF385BQ569K4 471 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 RPS26P11Q5JNZ5 115 aaPredicted RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 TBCELQ5QJ74 424 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 FBXO31Q5XUX0 539 aaPredicted RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 SLC23A3Q6PIS1 610 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 OGFOD3Q6PK18 319 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 SHISA2Q6UWI4 295 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 FOXD4L3Q6VB84 417 aaPredicted RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 Q6ZS46 218 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 HFE2Q6ZVN8 426 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP51Q70EK9 711 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 DYMQ7RTS9 669 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZAR1Q86SH2 424 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 NPAS4Q8IUM7 802 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 TRIM42Q8IWZ5 723 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 C1orf127Q8N9H9 656 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 TMEM102Q8N9M5 508 aaPredicted RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 RETREG2Q8NC44 543 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 FBXO15Q8NCQ5 510 aaPredicted RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 SHKBP1Q8TBC3 707 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZNF507Q8TCN5 953 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 ASAP3Q8TDY4 903 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 FAM168AQ92567 244 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 PBXIP1Q96AQ6 731 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 FAM46AQ96IP4 442 aaKnown RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 HSH2DQ96JZ2 352 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 DMRTB1Q96MA1 342 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 MFSD14AQ96MC6 490 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 FRMD6Q96NE9 622 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 NSUN5Q96P11 429 aaKnown RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 NECAB3Q96P71 396 aaPredicted RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 SLC26A8Q96RN1 970 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 CSRNP1Q96S65 589 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 OSMRQ99650 979 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 FOXQ1Q9C009 403 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 CLEC4MQ9H2X3 399 aaPredicted RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 TRIT1Q9H3H1 467 aaKnown RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 RC3H2Q9HBD1 1191 aaKnown RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 LRRC4CQ9HCJ2 640 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 STRN4Q9NRL3 753 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 LMCD1Q9NZU5 365 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP35Q9P2H5 1018 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 CCDC39Q9UFE4 941 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 PCOLCE2Q9UKZ9 415 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 KCNH3Q9ULD8 1083 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 NOVA2Q9UNW9 492 aaKnown RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 AP4E1Q9UPM8 1137 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 STARD13Q9Y3M8 1113 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 MAFBQ9Y5Q3 323 aaPredicted RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 LOC100289279A0A1B0GTE1 492 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 A0A1W2PQ27 194 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 A0A1W2PQ64 194 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 A0A1W2PQC6 194 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 A0A1W2PQD8 194 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 A0A1W2PQJ5 194 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 RBM47A0AV96 593 aaKnown RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 HMX2A2RU54 273 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 KRTAP9-7A8MTY7 169 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZBTB42B2RXF5 422 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 J3QW42 95 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 IGF2BP3O00425 579 aaKnown RBP eCLIP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZBTB7BO15156 539 aaPredicted RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 MMP20O60882 483 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 AOC2O75106 756 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 CPNE3O75131 537 aaKnown RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 GADD45BO75293 160 aaPredicted RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 ATG7O95352 703 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 TSPAN15O95858 294 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 TGFB1P01137 390 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 HOXB4P17483 251 aaPredicted RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 ERCC3P19447 782 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 RAB6AP20340 208 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 ATP2B4P23634 1241 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 CDC25BP30305 580 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 ETV3P41162 512 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 KIR3DL1P43629 444 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 NLRP12P59046 1061 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 CLDN10P78369 228 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 ID3Q02535 119 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 FKBP4Q02790 459 aaKnown RBP eCLIP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 IKZF1Q13422 519 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 FKBP5Q13451 457 aaPredicted RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 SNX17Q15036 470 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 AKAP4Q5JQC9 854 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 TCERG1LQ5VWI1 586 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 DTHD1Q6ZMT9 781 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 C8orf86Q6ZUL3 223 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 SND1Q7KZF4 910 aaKnown RBP eCLIP0.86□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 131.1 ms