RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 PSMG3-AS1Q96PY0 264 aa10.03□□□□□ -0.8
NUP54-209ENST00000510569 GNEQ9Y223 722 aaKnown RBP10.03□□□□□ -0.8
NUP54-209ENST00000510569 SOWAHDA6NJG2 315 aa10.02□□□□□ -0.81
NUP54-209ENST00000510569 EIF1AYO14602 144 aaKnown RBP10.02□□□□□ -0.81
NUP54-209ENST00000510569 PTPN12Q05209 780 aaKnown RBP10.02□□□□□ -0.81
NUP54-209ENST00000510569 C12orf50Q8NA57 414 aaPredicted RBP10.02□□□□□ -0.81
NUP54-209ENST00000510569 C2CD4AQ8NCU7 369 aaPredicted RBP10.02□□□□□ -0.81
NUP54-209ENST00000510569 CCDC74AQ96AQ1 378 aa10.02□□□□□ -0.81
NUP54-209ENST00000510569 TRIM56Q9BRZ2 755 aaKnown RBP10.02□□□□□ -0.81
NUP54-209ENST00000510569 EHD4Q9H223 541 aa10.02□□□□□ -0.81
NUP54-209ENST00000510569 CYP11A1P05108 521 aa10.01□□□□□ -0.81
NUP54-209ENST00000510569 INTS5Q6P9B9 1019 aaKnown RBP10.01□□□□□ -0.81
NUP54-209ENST00000510569 SHKBP1Q8TBC3 707 aa10.01□□□□□ -0.81
NUP54-209ENST00000510569 ABCB6Q9NP58 842 aa10.01□□□□□ -0.81
NUP54-209ENST00000510569 CTSBP07858 339 aa10□□□□□ -0.81
NUP54-209ENST00000510569 MAOBP27338 520 aa10□□□□□ -0.81
NUP54-209ENST00000510569 HP1BP3Q5SSJ5 553 aaPredicted RBP10□□□□□ -0.81
NUP54-209ENST00000510569 NIF3L1Q9GZT8 377 aa10□□□□□ -0.81
NUP54-209ENST00000510569 TIMELESSQ9UNS1 1208 aa10□□□□□ -0.81
NUP54-209ENST00000510569 ADH5P11766 374 aa9.99□□□□□ -0.81
NUP54-209ENST00000510569 DRD2P14416 443 aa9.99□□□□□ -0.81
NUP54-209ENST00000510569 SPINK2P20155 84 aa9.99□□□□□ -0.81
NUP54-209ENST00000510569 GRIK1P39086 918 aa9.99□□□□□ -0.81
NUP54-209ENST00000510569 SOX4Q06945 474 aaPredicted RBP9.99□□□□□ -0.81
NUP54-209ENST00000510569 POU4F3Q15319 338 aa9.99□□□□□ -0.81
NUP54-209ENST00000510569 ZFYVE1Q9HBF4 777 aa9.99□□□□□ -0.81
NUP54-209ENST00000510569 DDX54Q8TDD1 881 aaKnown RBP9.98□□□□□ -0.81
NUP54-209ENST00000510569 EZH1Q92800 747 aaPredicted RBP9.98□□□□□ -0.81
NUP54-209ENST00000510569 CSRNP1Q96S65 589 aa9.98□□□□□ -0.81
NUP54-209ENST00000510569 BRD1O95696 1058 aa9.97□□□□□ -0.81
NUP54-209ENST00000510569 RPS26P11Q5JNZ5 115 aaPredicted RBP9.97□□□□□ -0.81
NUP54-209ENST00000510569 CDPF1Q6NVV7 123 aa9.97□□□□□ -0.81
NUP54-209ENST00000510569 GLIS3Q8NEA6 775 aa9.97□□□□□ -0.81
NUP54-209ENST00000510569 TMC1Q8TDI8 760 aa9.97□□□□□ -0.81
NUP54-209ENST00000510569 MFSD14AQ96MC6 490 aa9.97□□□□□ -0.81
NUP54-209ENST00000510569 RXRBP28702 533 aa9.96□□□□□ -0.82
NUP54-209ENST00000510569 DTX1Q86Y01 620 aa9.96□□□□□ -0.82
NUP54-209ENST00000510569 TRAK1Q9UPV9 953 aa9.96□□□□□ -0.82
NUP54-209ENST00000510569 TMEM238LA0A1B0GVL6 79 aa9.95□□□□□ -0.82
NUP54-209ENST00000510569 FAM95CA0A1B0GW59 222 aa9.95□□□□□ -0.82
NUP54-209ENST00000510569 WDR64B1ANS9 1081 aa9.95□□□□□ -0.82
NUP54-209ENST00000510569 USP11P51784 963 aa9.95□□□□□ -0.82
NUP54-209ENST00000510569 GRM2Q14416 872 aa9.95□□□□□ -0.82
NUP54-209ENST00000510569 CPSF6Q16630 551 aaKnown RBP eCLIP9.95□□□□□ -0.82
NUP54-209ENST00000510569 FBLIM1Q8WUP2 373 aa9.95□□□□□ -0.82
NUP54-209ENST00000510569 CORO1BQ9BR76 489 aa9.95□□□□□ -0.82
NUP54-209ENST00000510569 SYNGAP1Q96PV0 1343 aa9.94□□□□□ -0.82
NUP54-209ENST00000510569 GADD45BO75293 160 aaPredicted RBP9.94□□□□□ -0.82
NUP54-209ENST00000510569 ECEL1O95672 775 aa9.94□□□□□ -0.82
NUP54-209ENST00000510569 F13BP05160 661 aa9.94□□□□□ -0.82
NUP54-209ENST00000510569 AP3B2Q13367 1082 aa9.94□□□□□ -0.82
NUP54-209ENST00000510569 PAOXQ6QHF9 649 aa9.94□□□□□ -0.82
NUP54-209ENST00000510569 TMC7Q7Z402 723 aa9.94□□□□□ -0.82
NUP54-209ENST00000510569 YIPF2Q9BWQ6 316 aa9.94□□□□□ -0.82
NUP54-209ENST00000510569 DCTN4Q9UJW0 460 aa9.94□□□□□ -0.82
NUP54-209ENST00000510569 ACTL7BQ9Y614 415 aa9.94□□□□□ -0.82
NUP54-209ENST00000510569 GIMAP7Q8NHV1 300 aa9.93□□□□□ -0.82
NUP54-209ENST00000510569 EPS8L3Q8TE67 593 aaKnown RBP9.93□□□□□ -0.82
NUP54-209ENST00000510569 GSX1Q9H4S2 264 aaPredicted RBP9.93□□□□□ -0.82
NUP54-209ENST00000510569 PIM2Q9P1W9 311 aa9.93□□□□□ -0.82
NUP54-209ENST00000510569 FAAP100Q0VG06 881 aa9.92□□□□□ -0.82
NUP54-209ENST00000510569 PRKAG2Q9UGJ0 569 aa9.92□□□□□ -0.82
NUP54-209ENST00000510569 ADAMTS4O75173 837 aa9.91□□□□□ -0.82
NUP54-209ENST00000510569 DSC3Q14574 896 aa9.91□□□□□ -0.82
NUP54-209ENST00000510569 NFKBIBQ15653 356 aa9.91□□□□□ -0.82
NUP54-209ENST00000510569 ATG3Q9NT62 314 aa9.91□□□□□ -0.82
NUP54-209ENST00000510569 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.9□□□□□ -0.82
NUP54-209ENST00000510569 AKAP4Q5JQC9 854 aa9.9□□□□□ -0.82
NUP54-209ENST00000510569 ZAR1Q86SH2 424 aa9.9□□□□□ -0.82
NUP54-209ENST00000510569 FBXL6Q8N531 539 aa9.9□□□□□ -0.82
NUP54-209ENST00000510569 GATA6Q92908 595 aa9.9□□□□□ -0.82
NUP54-209ENST00000510569 METTL22Q9BUU2 404 aaPredicted RBP9.9□□□□□ -0.82
NUP54-209ENST00000510569 WDR18Q9BV38 432 aa9.9□□□□□ -0.82
NUP54-209ENST00000510569 ACSS3Q9H6R3 686 aa9.9□□□□□ -0.82
NUP54-209ENST00000510569 BIN2Q9UBW5 565 aaPredicted RBP9.9□□□□□ -0.82
NUP54-209ENST00000510569 TREHO43280 583 aa9.89□□□□□ -0.83
NUP54-209ENST00000510569 AOC2O75106 756 aa9.89□□□□□ -0.83
NUP54-209ENST00000510569 FOSL1P15407 271 aa9.89□□□□□ -0.83
NUP54-209ENST00000510569 HOXA10P31260 410 aaPredicted RBP9.89□□□□□ -0.83
NUP54-209ENST00000510569 GP2P55259 537 aaKnown RBP9.89□□□□□ -0.83
NUP54-209ENST00000510569 MSMPQ1L6U9 139 aa9.89□□□□□ -0.83
NUP54-209ENST00000510569 MCTP1Q6DN14 999 aa9.89□□□□□ -0.83
NUP54-209ENST00000510569 SHISA5Q8N114 240 aa9.89□□□□□ -0.83
NUP54-209ENST00000510569 OSBPL1AQ9BXW6 950 aa9.89□□□□□ -0.83
NUP54-209ENST00000510569 KRTAP9-2Q9BYQ4 174 aa9.89□□□□□ -0.83
NUP54-209ENST00000510569 SEMA6CQ9H3T2 930 aa9.89□□□□□ -0.83
NUP54-209ENST00000510569 FAM105AQ9NUU6 356 aa9.89□□□□□ -0.83
NUP54-209ENST00000510569 AP4E1Q9UPM8 1137 aa9.89□□□□□ -0.83
NUP54-209ENST00000510569 LEMD3Q9Y2U8 911 aa9.89□□□□□ -0.83
NUP54-209ENST00000510569 OAS3Q9Y6K5 1087 aaKnown RBP9.89□□□□□ -0.83
NUP54-209ENST00000510569 ADMP35318 185 aa9.88□□□□□ -0.83
NUP54-209ENST00000510569 MAP7Q14244 749 aa9.88□□□□□ -0.83
NUP54-209ENST00000510569 PI16Q6UXB8 463 aa9.88□□□□□ -0.83
NUP54-209ENST00000510569 RAD18Q9NS91 495 aa9.88□□□□□ -0.83
NUP54-209ENST00000510569 XRCC5P13010 732 aaKnown RBP9.87□□□□□ -0.83
NUP54-209ENST00000510569 RAB6AP20340 208 aa9.87□□□□□ -0.83
NUP54-209ENST00000510569 PDE3AQ14432 1141 aa9.87□□□□□ -0.83
NUP54-209ENST00000510569 ENOX2Q16206 610 aaKnown RBP9.87□□□□□ -0.83
NUP54-209ENST00000510569 DYMQ7RTS9 669 aa9.87□□□□□ -0.83
NUP54-209ENST00000510569 TBC1D32Q96NH3 1257 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms