RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 MAP3K11Q16584 847 aa17.61■□□□□ 0.41
UPF3A-204ENST00000475218 TRPA1O75762 1119 aa17.6■□□□□ 0.41
UPF3A-204ENST00000475218 FRAT1Q92837 279 aaPredicted RBP17.6■□□□□ 0.41
UPF3A-204ENST00000475218 CLUAP1Q96AJ1 413 aa17.6■□□□□ 0.41
UPF3A-204ENST00000475218 TEPSINQ96N21 525 aa17.6■□□□□ 0.41
UPF3A-204ENST00000475218 ANGEL1Q9UNK9 670 aaKnown RBP17.6■□□□□ 0.41
UPF3A-204ENST00000475218 OTOFQ9HC10 1997 aa17.6■□□□□ 0.41
UPF3A-204ENST00000475218 LAMB1P07942 1786 aa17.59■□□□□ 0.41
UPF3A-204ENST00000475218 MYO1BO43795 1136 aa17.59■□□□□ 0.41
UPF3A-204ENST00000475218 SLC5A1P13866 664 aa17.59■□□□□ 0.41
UPF3A-204ENST00000475218 ATP2B3Q16720 1220 aa17.59■□□□□ 0.41
UPF3A-204ENST00000475218 TBC1D22AQ8WUA7 517 aa17.59■□□□□ 0.41
UPF3A-204ENST00000475218 CLMNQ96JQ2 1002 aa17.59■□□□□ 0.41
UPF3A-204ENST00000475218 GNAI3P08754 354 aa17.58■□□□□ 0.41
UPF3A-204ENST00000475218 ADORA1P30542 326 aa17.58■□□□□ 0.41
UPF3A-204ENST00000475218 IL15P40933 162 aaPredicted RBP17.58■□□□□ 0.41
UPF3A-204ENST00000475218 HDLBPQ00341 1268 aaKnown RBP17.58■□□□□ 0.41
UPF3A-204ENST00000475218 MKRN3Q13064 507 aaKnown RBP17.58■□□□□ 0.41
UPF3A-204ENST00000475218 ARMC9Q7Z3E5 817 aa17.58■□□□□ 0.41
UPF3A-204ENST00000475218 ABHD8Q96I13 439 aa17.58■□□□□ 0.41
UPF3A-204ENST00000475218 IPO8O15397 1037 aaKnown RBP17.58■□□□□ 0.4
UPF3A-204ENST00000475218 FRAT2O75474 233 aaPredicted RBP17.58■□□□□ 0.4
UPF3A-204ENST00000475218 APOBEC3HQ6NTF7 200 aaKnown RBP17.58■□□□□ 0.4
UPF3A-204ENST00000475218 TMEM57Q8N5G2 664 aa17.58■□□□□ 0.4
UPF3A-204ENST00000475218 CEP126Q9P2H0 1117 aa17.58■□□□□ 0.4
UPF3A-204ENST00000475218 USP2O75604 605 aaPredicted RBP17.57■□□□□ 0.4
UPF3A-204ENST00000475218 PHKA1P46020 1223 aa17.57■□□□□ 0.4
UPF3A-204ENST00000475218 SPRYD7Q5W111 196 aa17.57■□□□□ 0.4
UPF3A-204ENST00000475218 ZDHHC15Q96MV8 337 aa17.57■□□□□ 0.4
UPF3A-204ENST00000475218 SRGAP3O43295 1099 aa17.56■□□□□ 0.4
UPF3A-204ENST00000475218 TM4SF4P48230 202 aa17.56■□□□□ 0.4
UPF3A-204ENST00000475218 CACNB3P54284 484 aa17.56■□□□□ 0.4
UPF3A-204ENST00000475218 MRIQ9BWK5 157 aa17.56■□□□□ 0.4
UPF3A-204ENST00000475218 TMEM39BQ9GZU3 492 aa17.56■□□□□ 0.4
UPF3A-204ENST00000475218 HDAC5Q9UQL6 1122 aa17.56■□□□□ 0.4
UPF3A-204ENST00000475218 PNMA6EA0A0J9YXQ4 647 aa17.56■□□□□ 0.4
UPF3A-204ENST00000475218 TCP10L2B9ZVM9 353 aa17.56■□□□□ 0.4
UPF3A-204ENST00000475218 REM2Q8IYK8 340 aaPredicted RBP17.56■□□□□ 0.4
UPF3A-204ENST00000475218 SUGT1Q9Y2Z0 365 aa17.56■□□□□ 0.4
UPF3A-204ENST00000475218 ZBED9Q6R2W3 1325 aa17.55■□□□□ 0.4
UPF3A-204ENST00000475218 RLBP1P12271 317 aa17.55■□□□□ 0.4
UPF3A-204ENST00000475218 GJA5P36382 358 aa17.55■□□□□ 0.4
UPF3A-204ENST00000475218 TIMM10P62072 90 aa17.55■□□□□ 0.4
UPF3A-204ENST00000475218 SUPT20HL1Q3ZLR7 823 aa17.55■□□□□ 0.4
UPF3A-204ENST00000475218 TEKT1Q969V4 418 aa17.55■□□□□ 0.4
UPF3A-204ENST00000475218 MCOLN1Q9GZU1 580 aa17.55■□□□□ 0.4
UPF3A-204ENST00000475218 ZBTB22O15209 634 aa17.54■□□□□ 0.4
UPF3A-204ENST00000475218 PRDX5P30044 214 aa17.54■□□□□ 0.4
UPF3A-204ENST00000475218 TFCP2Q12800 502 aa17.54■□□□□ 0.4
UPF3A-204ENST00000475218 ZKSCAN2Q63HK3 967 aa17.54■□□□□ 0.4
UPF3A-204ENST00000475218 PPP1R12BO60237 982 aaPredicted RBP17.53■□□□□ 0.4
UPF3A-204ENST00000475218 GNAI2P04899 355 aa17.53■□□□□ 0.4
UPF3A-204ENST00000475218 TNFAIP1Q13829 316 aa17.53■□□□□ 0.4
UPF3A-204ENST00000475218 CCDC102BQ68D86 513 aa17.53■□□□□ 0.4
UPF3A-204ENST00000475218 HHIPL2Q6UWX4 724 aa17.53■□□□□ 0.4
UPF3A-204ENST00000475218 WDR66Q8TBY9 1149 aa17.53■□□□□ 0.4
UPF3A-204ENST00000475218 R3HDMLQ9H3Y0 253 aa17.53■□□□□ 0.4
UPF3A-204ENST00000475218 DIXDC1Q155Q3 683 aa17.53■□□□□ 0.4
UPF3A-204ENST00000475218 WNK4Q96J92 1243 aa17.53■□□□□ 0.4
UPF3A-204ENST00000475218 HTTP42858 3142 aa17.53■□□□□ 0.4
UPF3A-204ENST00000475218 SALL1Q9NSC2 1324 aa17.52■□□□□ 0.4
UPF3A-204ENST00000475218 TBC1D8O95759 1140 aa17.52■□□□□ 0.4
UPF3A-204ENST00000475218 RASGRF1Q13972 1273 aa17.52■□□□□ 0.4
UPF3A-204ENST00000475218 SLC10A4Q96EP9 437 aa17.52■□□□□ 0.4
UPF3A-204ENST00000475218 DAGLAQ9Y4D2 1042 aa17.52■□□□□ 0.4
UPF3A-204ENST00000475218 A0A1B0GUL7 405 aa17.51■□□□□ 0.39
UPF3A-204ENST00000475218 UNCXA6NJT0 531 aa17.51■□□□□ 0.39
UPF3A-204ENST00000475218 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.51■□□□□ 0.39
UPF3A-204ENST00000475218 MAST3O60307 1309 aa17.51■□□□□ 0.39
UPF3A-204ENST00000475218 SEMA3EO15041 775 aa17.51■□□□□ 0.39
UPF3A-204ENST00000475218 DGKZQ13574 1117 aa17.51■□□□□ 0.39
UPF3A-204ENST00000475218 XAGE2Q96GT9 111 aa17.51■□□□□ 0.39
UPF3A-204ENST00000475218 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.51■□□□□ 0.39
UPF3A-204ENST00000475218 IREB2P48200 963 aaKnown RBP17.5■□□□□ 0.39
UPF3A-204ENST00000475218 POLA2Q14181 598 aa17.5■□□□□ 0.39
UPF3A-204ENST00000475218 FKBP1CQ5VVH2 108 aa17.5■□□□□ 0.39
UPF3A-204ENST00000475218 FAM83AQ86UY5 434 aa17.5■□□□□ 0.39
UPF3A-204ENST00000475218 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.5■□□□□ 0.39
UPF3A-204ENST00000475218 CNKSR2Q8WXI2 1034 aa17.5■□□□□ 0.39
UPF3A-204ENST00000475218 IGF2BP3O00425 579 aaKnown RBP eCLIP17.49■□□□□ 0.39
UPF3A-204ENST00000475218 ZBTB48P10074 688 aaPredicted RBP17.49■□□□□ 0.39
UPF3A-204ENST00000475218 CDC42EP5Q6NZY7 148 aa17.49■□□□□ 0.39
UPF3A-204ENST00000475218 ANKRD13AQ8IZ07 590 aa17.49■□□□□ 0.39
UPF3A-204ENST00000475218 CFHR5Q9BXR6 569 aa17.49■□□□□ 0.39
UPF3A-204ENST00000475218 C1orf115Q9H7X2 142 aa17.49■□□□□ 0.39
UPF3A-204ENST00000475218 GNL3LQ9NVN8 582 aaKnown RBP17.49■□□□□ 0.39
UPF3A-204ENST00000475218 DENND2AQ9ULE3 1009 aa17.49■□□□□ 0.39
UPF3A-204ENST00000475218 MYH2Q9UKX2 1941 aa17.48■□□□□ 0.39
UPF3A-204ENST00000475218 ZBTB7BO15156 539 aaPredicted RBP17.48■□□□□ 0.39
UPF3A-204ENST00000475218 TNNI2P48788 182 aa17.48■□□□□ 0.39
UPF3A-204ENST00000475218 SREBF2Q12772 1141 aa17.48■□□□□ 0.39
UPF3A-204ENST00000475218 ZNF384Q8TF68 577 aa17.48■□□□□ 0.39
UPF3A-204ENST00000475218 ELP3Q9H9T3 547 aa17.48■□□□□ 0.39
UPF3A-204ENST00000475218 PDS5AQ29RF7 1337 aaKnown RBP17.48■□□□□ 0.39
UPF3A-204ENST00000475218 RPAP1Q9BWH6 1393 aaPredicted RBP17.48■□□□□ 0.39
UPF3A-204ENST00000475218 LDHBP07195 334 aaKnown RBP17.48■□□□□ 0.39
UPF3A-204ENST00000475218 NFIAQ12857 509 aa17.48■□□□□ 0.39
UPF3A-204ENST00000475218 VGLL4Q14135 290 aa17.48■□□□□ 0.39
UPF3A-204ENST00000475218 IFNL1Q8IU54 200 aa17.48■□□□□ 0.39
UPF3A-204ENST00000475218 SSH3Q8TE77 659 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms