RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 GPS2Q13227 327 aa12.3□□□□□ -0.44
CHD3-208ENST00000470531 DNAJC21Q5F1R6 531 aaKnown RBP12.3□□□□□ -0.44
CHD3-208ENST00000470531 NEURL4Q96JN8 1562 aa12.3□□□□□ -0.44
CHD3-208ENST00000470531 UBE2Q2LH0YL09 131 aa12.29□□□□□ -0.44
CHD3-208ENST00000470531 EPB41L2O43491 1005 aaKnown RBP12.29□□□□□ -0.44
CHD3-208ENST00000470531 IPO7O95373 1038 aaKnown RBP12.29□□□□□ -0.44
CHD3-208ENST00000470531 FGAP02671 866 aa12.29□□□□□ -0.44
CHD3-208ENST00000470531 SSBP05455 408 aaKnown RBP eCLIP12.29□□□□□ -0.44
CHD3-208ENST00000470531 EVCP57679 992 aa12.29□□□□□ -0.44
CHD3-208ENST00000470531 NSUN7Q8NE18 718 aaKnown RBP12.29□□□□□ -0.44
CHD3-208ENST00000470531 NUP88Q99567 741 aaPredicted RBP12.29□□□□□ -0.44
CHD3-208ENST00000470531 VAT1LQ9HCJ6 419 aa12.29□□□□□ -0.44
CHD3-208ENST00000470531 CABP5Q9NP86 173 aa12.29□□□□□ -0.44
CHD3-208ENST00000470531 FANCLQ9NW38 375 aa12.29□□□□□ -0.44
CHD3-208ENST00000470531 FBXO38Q6PIJ6 1188 aa12.29□□□□□ -0.44
CHD3-208ENST00000470531 STOX1Q6ZVD7 989 aa12.29□□□□□ -0.44
CHD3-208ENST00000470531 TRMT1LQ7Z2T5 733 aaKnown RBP12.29□□□□□ -0.44
CHD3-208ENST00000470531 ACSBG1Q96GR2 724 aa12.29□□□□□ -0.44
CHD3-208ENST00000470531 XAGE2Q96GT9 111 aa12.29□□□□□ -0.44
CHD3-208ENST00000470531 PSMB7Q99436 277 aa12.29□□□□□ -0.44
CHD3-208ENST00000470531 DDX41Q9UJV9 622 aaKnown RBP12.29□□□□□ -0.44
CHD3-208ENST00000470531 PDIA3P30101 505 aaKnown RBP12.29□□□□□ -0.44
CHD3-208ENST00000470531 SIGLEC1Q9BZZ2 1709 aa12.29□□□□□ -0.44
CHD3-208ENST00000470531 SLFN14P0C7P3 912 aa12.28□□□□□ -0.44
CHD3-208ENST00000470531 PFKFB1P16118 471 aa12.28□□□□□ -0.44
CHD3-208ENST00000470531 PTPN12Q05209 780 aaKnown RBP12.28□□□□□ -0.44
CHD3-208ENST00000470531 SSRP1Q08945 709 aaKnown RBP12.28□□□□□ -0.44
CHD3-208ENST00000470531 ANO1Q5XXA6 986 aa12.28□□□□□ -0.44
CHD3-208ENST00000470531 MAGEB6Q8N7X4 407 aa12.28□□□□□ -0.44
CHD3-208ENST00000470531 OSBP2Q969R2 916 aa12.28□□□□□ -0.44
CHD3-208ENST00000470531 TM6SF1Q9BZW5 370 aa12.28□□□□□ -0.44
CHD3-208ENST00000470531 ARMT1Q9H993 441 aa12.28□□□□□ -0.44
CHD3-208ENST00000470531 CPSF1Q10570 1443 aaKnown RBP12.28□□□□□ -0.44
CHD3-208ENST00000470531 CDC25AP30304 524 aa12.28□□□□□ -0.44
CHD3-208ENST00000470531 GSDMDP57764 484 aa12.28□□□□□ -0.44
CHD3-208ENST00000470531 SF3A3Q12874 501 aaKnown RBP eCLIP12.28□□□□□ -0.449e-16■■■■□ 23.7
CHD3-208ENST00000470531 FILIP1LQ4L180 1135 aa12.28□□□□□ -0.44
CHD3-208ENST00000470531 C10orf67Q8IYJ2 551 aa12.28□□□□□ -0.44
CHD3-208ENST00000470531 LRRN4CLQ8ND94 238 aa12.28□□□□□ -0.44
CHD3-208ENST00000470531 ZNF397Q8NF99 534 aaPredicted RBP12.28□□□□□ -0.44
CHD3-208ENST00000470531 AATKQ6ZMQ8 1374 aa12.28□□□□□ -0.44
CHD3-208ENST00000470531 CDK12Q9NYV4 1490 aaPredicted RBP12.28□□□□□ -0.44
CHD3-208ENST00000470531 KIF20BQ96Q89 1820 aa12.27□□□□□ -0.44
CHD3-208ENST00000470531 NUTM2BA6NNL0 878 aaPredicted RBP12.27□□□□□ -0.44
CHD3-208ENST00000470531 NUTM2EB1AL46 878 aaPredicted RBP12.27□□□□□ -0.44
CHD3-208ENST00000470531 M0R2C6 588 aa12.27□□□□□ -0.44
CHD3-208ENST00000470531 NUTM2AQ8IVF1 878 aaPredicted RBP12.27□□□□□ -0.44
CHD3-208ENST00000470531 SMARCE1Q969G3 411 aa12.27□□□□□ -0.44
CHD3-208ENST00000470531 VPS16Q9H269 839 aa12.27□□□□□ -0.44
CHD3-208ENST00000470531 TMOD3Q9NYL9 352 aa12.27□□□□□ -0.44
CHD3-208ENST00000470531 KIAA1468Q9P260 1216 aa12.27□□□□□ -0.44
CHD3-208ENST00000470531 USP6P35125 1406 aa12.27□□□□□ -0.44
CHD3-208ENST00000470531 SSH2Q76I76 1423 aa12.27□□□□□ -0.44
CHD3-208ENST00000470531 BTBD18B2RXH4 712 aa12.27□□□□□ -0.45
CHD3-208ENST00000470531 ZNF174Q15697 407 aa12.27□□□□□ -0.45
CHD3-208ENST00000470531 ANKRD20A12PQ8NF67 263 aa12.27□□□□□ -0.45
CHD3-208ENST00000470531 KCNG4Q8TDN1 519 aa12.27□□□□□ -0.45
CHD3-208ENST00000470531 TIGD1Q96MW7 591 aa12.27□□□□□ -0.45
CHD3-208ENST00000470531 RESTQ13127 1097 aa12.27□□□□□ -0.45
CHD3-208ENST00000470531 PUS7LQ9H0K6 701 aaKnown RBP12.27□□□□□ -0.45
CHD3-208ENST00000470531 NFE2L3Q9Y4A8 694 aa12.27□□□□□ -0.45
CHD3-208ENST00000470531 SRCAPQ6ZRS2 3230 aa12.27□□□□□ -0.45
CHD3-208ENST00000470531 MYO5BQ9ULV0 1848 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 TMEM232C9JQI7 657 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 FOXN1O15353 648 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 MRPS25P82663 173 aaKnown RBP12.26□□□□□ -0.45
CHD3-208ENST00000470531 BMS1Q14692 1282 aaKnown RBP12.26□□□□□ -0.45
CHD3-208ENST00000470531 ZNF569Q5MCW4 686 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 MYSM1Q5VVJ2 828 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 KRT40Q6A162 431 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 BLZF1Q9H2G9 400 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 ABCA9Q8IUA7 1624 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 CRB1P82279 1406 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 ATP7BP35670 1465 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 N4BP3O15049 544 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 CBFA2T2O43439 604 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 ATP5JP18859 108 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 IL15P40933 162 aaPredicted RBP12.26□□□□□ -0.45
CHD3-208ENST00000470531 HSPA2P54652 639 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 TERF2Q15554 542 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 IRX2Q9BZI1 471 aaPredicted RBP12.26□□□□□ -0.45
CHD3-208ENST00000470531 LMTK2Q8IWU2 1503 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 ADCY9O60503 1353 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 TMEM2Q9UHN6 1383 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 EYA2O00167 538 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 MBD4O95243 580 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 EIF5P55010 431 aaKnown RBP12.26□□□□□ -0.45
CHD3-208ENST00000470531 TANGO6Q9C0B7 1094 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 GUCA1BQ9UMX6 200 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 SLC4A4Q9Y6R1 1079 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 PIK3C2BO00750 1634 aa12.26□□□□□ -0.45
CHD3-208ENST00000470531 ADAMTS2O95450 1211 aa12.25□□□□□ -0.45
CHD3-208ENST00000470531 KCNQ4P56696 695 aa12.25□□□□□ -0.45
CHD3-208ENST00000470531 JAKMIP3Q5VZ66 844 aa12.25□□□□□ -0.45
CHD3-208ENST00000470531 WWC2Q6AWC2 1192 aa12.25□□□□□ -0.45
CHD3-208ENST00000470531 MFSD6Q6ZSS7 791 aa12.25□□□□□ -0.45
CHD3-208ENST00000470531 PLA2G4DQ86XP0 818 aa12.25□□□□□ -0.45
CHD3-208ENST00000470531 SLC52A2Q9HAB3 445 aa12.25□□□□□ -0.45
CHD3-208ENST00000470531 FRMPD1Q5SYB0 1578 aa12.25□□□□□ -0.45
CHD3-208ENST00000470531 ARHGEF10O15013 1369 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms