RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CCNJLQ8IV13 435 aa7.98□□□□□ -1.13
CCDC88A-210ENST00000468534 TCF12Q99081 682 aa7.98□□□□□ -1.13
CCDC88A-210ENST00000468534 CLEC4MQ9H2X3 399 aaPredicted RBP7.98□□□□□ -1.13
CCDC88A-210ENST00000468534 NDUFB5O43674 189 aa7.97□□□□□ -1.13
CCDC88A-210ENST00000468534 F13BP05160 661 aa7.97□□□□□ -1.13
CCDC88A-210ENST00000468534 MAOBP27338 520 aa7.97□□□□□ -1.13
CCDC88A-210ENST00000468534 ZNF423Q2M1K9 1284 aa7.97□□□□□ -1.13
CCDC88A-210ENST00000468534 DTX1Q86Y01 620 aa7.97□□□□□ -1.13
CCDC88A-210ENST00000468534 SHISA5Q8N114 240 aa7.97□□□□□ -1.13
CCDC88A-210ENST00000468534 GIMAP7Q8NHV1 300 aa7.97□□□□□ -1.13
CCDC88A-210ENST00000468534 OSBPL1AQ9BXW6 950 aa7.97□□□□□ -1.13
CCDC88A-210ENST00000468534 PIM2Q9P1W9 311 aa7.97□□□□□ -1.13
CCDC88A-210ENST00000468534 CTSBP07858 339 aa7.96□□□□□ -1.14
CCDC88A-210ENST00000468534 SOX4Q06945 474 aaPredicted RBP7.96□□□□□ -1.14
CCDC88A-210ENST00000468534 ORC1Q13415 861 aa7.96□□□□□ -1.14
CCDC88A-210ENST00000468534 PAOXQ6QHF9 649 aa7.96□□□□□ -1.14
CCDC88A-210ENST00000468534 C2CD4AQ8NCU7 369 aaPredicted RBP7.96□□□□□ -1.14
CCDC88A-210ENST00000468534 NRSN2Q9GZP1 204 aa7.96□□□□□ -1.14
CCDC88A-210ENST00000468534 EHD4Q9H223 541 aa7.96□□□□□ -1.14
CCDC88A-210ENST00000468534 NPHS2Q9NP85 383 aa7.96□□□□□ -1.14
CCDC88A-210ENST00000468534 LEMD3Q9Y2U8 911 aa7.96□□□□□ -1.14
CCDC88A-210ENST00000468534 WNT11O96014 354 aa7.95□□□□□ -1.14
CCDC88A-210ENST00000468534 ADH5P11766 374 aa7.95□□□□□ -1.14
CCDC88A-210ENST00000468534 RAB6AP20340 208 aa7.95□□□□□ -1.14
CCDC88A-210ENST00000468534 POU4F3Q15319 338 aa7.95□□□□□ -1.14
CCDC88A-210ENST00000468534 ECM1Q16610 540 aa7.95□□□□□ -1.14
CCDC88A-210ENST00000468534 AKAP4Q5JQC9 854 aa7.95□□□□□ -1.14
CCDC88A-210ENST00000468534 TMC1Q8TDI8 760 aa7.95□□□□□ -1.14
CCDC88A-210ENST00000468534 COL17A1Q9UMD9 1497 aaPredicted RBP7.94□□□□□ -1.14
CCDC88A-210ENST00000468534 ECEL1O95672 775 aa7.94□□□□□ -1.14
CCDC88A-210ENST00000468534 CYP11A1P05108 521 aa7.94□□□□□ -1.14
CCDC88A-210ENST00000468534 ARHGAP4P98171 946 aa7.94□□□□□ -1.14
CCDC88A-210ENST00000468534 TBC1D32Q96NH3 1257 aa7.94□□□□□ -1.14
CCDC88A-210ENST00000468534 YIPF2Q9BWQ6 316 aa7.94□□□□□ -1.14
CCDC88A-210ENST00000468534 RAD18Q9NS91 495 aa7.94□□□□□ -1.14
CCDC88A-210ENST00000468534 AP4E1Q9UPM8 1137 aa7.94□□□□□ -1.14
CCDC88A-210ENST00000468534 CPNE3O75131 537 aaKnown RBP7.93□□□□□ -1.14
CCDC88A-210ENST00000468534 NEFLP07196 543 aa7.93□□□□□ -1.14
CCDC88A-210ENST00000468534 TAL1P17542 331 aaPredicted RBP7.93□□□□□ -1.14
CCDC88A-210ENST00000468534 DYMQ7RTS9 669 aa7.93□□□□□ -1.14
CCDC88A-210ENST00000468534 CORO1BQ9BR76 489 aa7.93□□□□□ -1.14
CCDC88A-210ENST00000468534 ACTL7BQ9Y614 415 aa7.93□□□□□ -1.14
CCDC88A-210ENST00000468534 PAX4O43316 350 aa7.92□□□□□ -1.14
CCDC88A-210ENST00000468534 EIF4EBP3O60516 100 aaPredicted RBP7.92□□□□□ -1.14
CCDC88A-210ENST00000468534 ADMP35318 185 aa7.92□□□□□ -1.14
CCDC88A-210ENST00000468534 PDE3BQ13370 1112 aa7.92□□□□□ -1.14
CCDC88A-210ENST00000468534 KIAA0319Q5VV43 1072 aa7.92□□□□□ -1.14
CCDC88A-210ENST00000468534 TRIM56Q9BRZ2 755 aaKnown RBP7.92□□□□□ -1.14
CCDC88A-210ENST00000468534 ZNF576Q9H609 170 aa7.92□□□□□ -1.14
CCDC88A-210ENST00000468534 ANGEL1Q9UNK9 670 aaKnown RBP7.92□□□□□ -1.14
CCDC88A-210ENST00000468534 EIF5BO60841 1220 aaKnown RBP7.91□□□□□ -1.14
CCDC88A-210ENST00000468534 GADD45BO75293 160 aaPredicted RBP7.91□□□□□ -1.14
CCDC88A-210ENST00000468534 NFICP08651 508 aa7.91□□□□□ -1.14
CCDC88A-210ENST00000468534 PDE3AQ14432 1141 aa7.91□□□□□ -1.14
CCDC88A-210ENST00000468534 KRTAP4-12Q9BQ66 201 aa7.91□□□□□ -1.14
CCDC88A-210ENST00000468534 NIF3L1Q9GZT8 377 aa7.91□□□□□ -1.14
CCDC88A-210ENST00000468534 PRKAG2Q9UGJ0 569 aa7.91□□□□□ -1.14
CCDC88A-210ENST00000468534 FAM170BA6NMN3 283 aa7.9□□□□□ -1.14
CCDC88A-210ENST00000468534 GPR182O15218 404 aa7.9□□□□□ -1.14
CCDC88A-210ENST00000468534 B3GALT4O96024 378 aa7.9□□□□□ -1.14
CCDC88A-210ENST00000468534 FOSL1P15407 271 aa7.9□□□□□ -1.14
CCDC88A-210ENST00000468534 ZNF157P51786 506 aaPredicted RBP7.9□□□□□ -1.14
CCDC88A-210ENST00000468534 HP1BP3Q5SSJ5 553 aaPredicted RBP7.9□□□□□ -1.14
CCDC88A-210ENST00000468534 ZAR1Q86SH2 424 aa7.9□□□□□ -1.14
CCDC88A-210ENST00000468534 KRTAP1-3Q8IUG1 177 aa7.9□□□□□ -1.14
CCDC88A-210ENST00000468534 DDX54Q8TDD1 881 aaKnown RBP7.9□□□□□ -1.14
CCDC88A-210ENST00000468534 EZH1Q92800 747 aaPredicted RBP7.9□□□□□ -1.14
CCDC88A-210ENST00000468534 FAM129BQ96TA1 746 aa7.9□□□□□ -1.14
CCDC88A-210ENST00000468534 LGR6Q9HBX8 967 aa7.9□□□□□ -1.14
CCDC88A-210ENST00000468534 FAM105AQ9NUU6 356 aa7.9□□□□□ -1.14
CCDC88A-210ENST00000468534 CYP26A1O43174 497 aa7.89□□□□□ -1.15
CCDC88A-210ENST00000468534 RETREG2Q8NC44 543 aa7.89□□□□□ -1.15
CCDC88A-210ENST00000468534 CCDC74AQ96AQ1 378 aa7.89□□□□□ -1.15
CCDC88A-210ENST00000468534 METTL22Q9BUU2 404 aaPredicted RBP7.89□□□□□ -1.15
CCDC88A-210ENST00000468534 LRRC4CQ9HCJ2 640 aa7.89□□□□□ -1.15
CCDC88A-210ENST00000468534 EIF1AYO14602 144 aaKnown RBP7.88□□□□□ -1.15
CCDC88A-210ENST00000468534 ITPKAP23677 461 aa7.88□□□□□ -1.15
CCDC88A-210ENST00000468534 ASPAP45381 313 aa7.88□□□□□ -1.15
CCDC88A-210ENST00000468534 MSMPQ1L6U9 139 aa7.88□□□□□ -1.15
CCDC88A-210ENST00000468534 LCE3BQ5TA77 95 aa7.88□□□□□ -1.15
CCDC88A-210ENST00000468534 ZC3H12CQ9C0D7 883 aaKnown RBP7.88□□□□□ -1.15
CCDC88A-210ENST00000468534 SEMA6CQ9H3T2 930 aa7.88□□□□□ -1.15
CCDC88A-210ENST00000468534 ZFYVE1Q9HBF4 777 aa7.88□□□□□ -1.15
CCDC88A-210ENST00000468534 ABCB6Q9NP58 842 aa7.88□□□□□ -1.15
CCDC88A-210ENST00000468534 DAGLAQ9Y4D2 1042 aa7.88□□□□□ -1.15
CCDC88A-210ENST00000468534 SUPT5HO00267 1087 aaKnown RBP7.87□□□□□ -1.15
CCDC88A-210ENST00000468534 MAP7Q14244 749 aa7.87□□□□□ -1.15
CCDC88A-210ENST00000468534 TXNDC2Q86VQ3 553 aa7.87□□□□□ -1.15
CCDC88A-210ENST00000468534 CCDC39Q9UFE4 941 aa7.87□□□□□ -1.15
CCDC88A-210ENST00000468534 AOC2O75106 756 aa7.86□□□□□ -1.15
CCDC88A-210ENST00000468534 CPSF6Q16630 551 aaKnown RBP eCLIP7.86□□□□□ -1.151e-7■■■■■ 28.7
CCDC88A-210ENST00000468534 ZNF765Q7L2R6 523 aa7.86□□□□□ -1.15
CCDC88A-210ENST00000468534 ABI1Q8IZP0 508 aa7.86□□□□□ -1.15
CCDC88A-210ENST00000468534 EPS8L3Q8TE67 593 aaKnown RBP7.86□□□□□ -1.15
CCDC88A-210ENST00000468534 GATA6Q92908 595 aa7.86□□□□□ -1.15
CCDC88A-210ENST00000468534 CITED4Q96RK1 184 aa7.86□□□□□ -1.15
CCDC88A-210ENST00000468534 WDR18Q9BV38 432 aa7.86□□□□□ -1.15
CCDC88A-210ENST00000468534 ACSS3Q9H6R3 686 aa7.86□□□□□ -1.15
CCDC88A-210ENST00000468534 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.85□□□□□ -1.15
CCDC88A-210ENST00000468534 TMEM238LA0A1B0GVL6 79 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 218.4 ms