RNA–Protein interactions for RNA: ENST00000459854.5

UFD1-205, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best)

Gene UFD1, Length 5,038 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-205ENST00000459854 CYLC1P35663 651 aaPredicted RBP11.13□□□□□ -0.63
UFD1-205ENST00000459854 EN1Q05925 392 aaPredicted RBP11.13□□□□□ -0.63
UFD1-205ENST00000459854 HLTFQ14527 1009 aaKnown RBP eCLIP11.13□□□□□ -0.63
UFD1-205ENST00000459854 CCDC178Q5BJE1 867 aa11.13□□□□□ -0.63
UFD1-205ENST00000459854 CACNA2D4Q7Z3S7 1137 aa11.13□□□□□ -0.63
UFD1-205ENST00000459854 NBPF5PQ86XG9 351 aaPredicted RBP11.13□□□□□ -0.63
UFD1-205ENST00000459854 NUTM1Q86Y26 1132 aa11.13□□□□□ -0.63
UFD1-205ENST00000459854 PI4KAP1Q8N8J0 262 aa11.13□□□□□ -0.63
UFD1-205ENST00000459854 CWC25Q9NXE8 425 aaPredicted RBP11.13□□□□□ -0.63
UFD1-205ENST00000459854 PPFIBP2Q8ND30 876 aa11.13□□□□□ -0.63
UFD1-205ENST00000459854 KIF1BPQ96EK5 621 aa11.13□□□□□ -0.63
UFD1-205ENST00000459854 LUC7L2Q9Y383 392 aaKnown RBP11.13□□□□□ -0.63
UFD1-205ENST00000459854 SOGA3Q5TF21 947 aa11.13□□□□□ -0.63
UFD1-205ENST00000459854 USP16Q9Y5T5 823 aa11.13□□□□□ -0.63
UFD1-205ENST00000459854 CTAGE9A4FU28 777 aa11.13□□□□□ -0.63
UFD1-205ENST00000459854 BCCIPQ9P287 314 aaKnown RBP eCLIP11.13□□□□□ -0.63
UFD1-205ENST00000459854 NIP7Q9Y221 180 aaKnown RBP eCLIP11.13□□□□□ -0.63
UFD1-205ENST00000459854 CEMIPQ8WUJ3 1361 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 PRPHP41219 470 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 PARP10Q53GL7 1025 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 CEP57Q86XR8 500 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 PLBD2Q8NHP8 589 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 USH1CQ9Y6N9 552 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 ADRA2BP18089 450 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 GPTP24298 496 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 MAP2K2P36507 400 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 TPTE2Q6XPS3 522 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 KRBA2Q6ZNG9 492 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 CROCCP2Q86T23 111 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 CCDC77Q9BR77 488 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 ZSCAN22P10073 491 aaPredicted RBP11.12□□□□□ -0.63
UFD1-205ENST00000459854 SH2D4BQ5SQS7 431 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 CCDC186Q7Z3E2 898 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 FSIP1Q8NA03 581 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 STIM2Q9P246 746 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 GSTTP1A0A1W2PQM5 241 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 KIF4AO95239 1232 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 HDAC1Q13547 482 aaPredicted RBP11.12□□□□□ -0.63
UFD1-205ENST00000459854 PIBF1Q8WXW3 757 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 PLVAPQ9BX97 442 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 DNAI1Q9UI46 699 aa11.12□□□□□ -0.63
UFD1-205ENST00000459854 CCDC38Q502W7 563 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 NLGN1Q8N2Q7 840 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 MRPL50Q8N5N7 158 aaKnown RBP11.11□□□□□ -0.63
UFD1-205ENST00000459854 CNNM3Q8NE01 707 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 ZNF622Q969S3 477 aaKnown RBP eCLIP11.11□□□□□ -0.634e-19■□□□□ 10.1
UFD1-205ENST00000459854 HMG20BQ9P0W2 317 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 RASAL2Q9UJF2 1139 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 RPS6KA4O75676 772 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 KRT83P78385 493 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 TTC39AQ5SRH9 613 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 RNF168Q8IYW5 571 aaPredicted RBP11.11□□□□□ -0.63
UFD1-205ENST00000459854 ATRIPQ8WXE1 791 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 GNL3LQ9NVN8 582 aaKnown RBP11.11□□□□□ -0.63
UFD1-205ENST00000459854 ALDH1L1O75891 902 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 NAA25Q14CX7 972 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 C8orf76Q96K31 380 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 RMND1Q9NWS8 449 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 VPS18Q9P253 973 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 HCLS1P14317 486 aaPredicted RBP11.11□□□□□ -0.63
UFD1-205ENST00000459854 IBSPP21815 317 aaPredicted RBP11.11□□□□□ -0.63
UFD1-205ENST00000459854 NUP133Q8WUM0 1156 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 SELENOOQ9BVL4 669 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 C1orf115Q9H7X2 142 aa11.11□□□□□ -0.63
UFD1-205ENST00000459854 NOL3O60936 208 aaKnown RBP11.1□□□□□ -0.63
UFD1-205ENST00000459854 MCM6Q14566 821 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 RC3H1Q5TC82 1133 aaKnown RBP11.1□□□□□ -0.63
UFD1-205ENST00000459854 VCXQ9H320 206 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 KDM4AO75164 1064 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 BMP15O95972 392 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 INPP5BP32019 993 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.1□□□□□ -0.63
UFD1-205ENST00000459854 UTP14AQ9BVJ6 771 aaKnown RBP11.1□□□□□ -0.63
UFD1-205ENST00000459854 LRRC27Q9C0I9 530 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 GOPCQ9HD26 462 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 SPINK5Q9NQ38 1064 aaPredicted RBP11.1□□□□□ -0.63
UFD1-205ENST00000459854 PEAK1Q9H792 1746 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 CCDC172P0C7W6 258 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 WWC2Q6AWC2 1192 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 LINS1Q8NG48 757 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 AFAP1L1Q8TED9 768 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 TRIM7Q9C029 511 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 DNAI2Q9GZS0 605 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 ZBTB1Q9Y2K1 713 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 ZNF521Q96K83 1311 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 MPHOSPH10O00566 681 aaKnown RBP11.1□□□□□ -0.63
UFD1-205ENST00000459854 PLSCR1O15162 318 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 CACNA2D3Q8IZS8 1091 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 SREK1Q8WXA9 508 aaKnown RBP11.1□□□□□ -0.63
UFD1-205ENST00000459854 RAB34Q9BZG1 259 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 SAMD15Q9P1V8 674 aa11.1□□□□□ -0.63
UFD1-205ENST00000459854 TACC1O75410 805 aa11.09□□□□□ -0.63
UFD1-205ENST00000459854 MAP3K9P80192 1104 aa11.09□□□□□ -0.63
UFD1-205ENST00000459854 CKAP2LQ8IYA6 745 aa11.09□□□□□ -0.63
UFD1-205ENST00000459854 TMEM57Q8N5G2 664 aa11.09□□□□□ -0.63
UFD1-205ENST00000459854 RPGRQ92834 1020 aaKnown RBP11.09□□□□□ -0.63
UFD1-205ENST00000459854 INTS4Q96HW7 963 aaKnown RBP11.09□□□□□ -0.63
UFD1-205ENST00000459854 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.09□□□□□ -0.63
UFD1-205ENST00000459854 F6X3S4 739 aa11.09□□□□□ -0.63
UFD1-205ENST00000459854 PPFIA3O75145 1194 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms