RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 PDE8BO95263 885 aa11.16□□□□□ -0.62
CUX1-206ENST00000437600 NTSR2O95665 410 aa11.16□□□□□ -0.62
CUX1-206ENST00000437600 POLR3DP05423 398 aaPredicted RBP11.16□□□□□ -0.62
CUX1-206ENST00000437600 LUZP1Q86V48 1076 aa11.16□□□□□ -0.62
CUX1-206ENST00000437600 CCDC144CPQ8IYA2 1237 aa11.16□□□□□ -0.62
CUX1-206ENST00000437600 BICD2Q8TD16 824 aa11.16□□□□□ -0.62
CUX1-206ENST00000437600 GPR108Q9NPR9 543 aa11.16□□□□□ -0.62
CUX1-206ENST00000437600 NPHP1O15259 732 aa11.15□□□□□ -0.62
CUX1-206ENST00000437600 FOXP2O15409 715 aa11.15□□□□□ -0.62
CUX1-206ENST00000437600 BRD2P25440 801 aaKnown RBP11.15□□□□□ -0.62
CUX1-206ENST00000437600 NARFQ9UHQ1 456 aa11.15□□□□□ -0.62
CUX1-206ENST00000437600 MYH3P11055 1940 aa11.15□□□□□ -0.62
CUX1-206ENST00000437600 SLC9C2Q5TAH2 1124 aa11.15□□□□□ -0.62
CUX1-206ENST00000437600 RC3H1Q5TC82 1133 aaKnown RBP11.15□□□□□ -0.62
CUX1-206ENST00000437600 LEO1Q8WVC0 666 aaPredicted RBP11.15□□□□□ -0.62
CUX1-206ENST00000437600 NOL7Q9UMY1 257 aaKnown RBP11.15□□□□□ -0.62
CUX1-206ENST00000437600 CICQ96RK0 1608 aaPredicted RBP11.15□□□□□ -0.62
CUX1-206ENST00000437600 BCORQ6W2J9 1755 aa11.15□□□□□ -0.62
CUX1-206ENST00000437600 ZNF831Q5JPB2 1677 aa11.15□□□□□ -0.63
CUX1-206ENST00000437600 TSGA10IPQ3SY00 556 aa11.14□□□□□ -0.63
CUX1-206ENST00000437600 CCDC102BQ68D86 513 aa11.14□□□□□ -0.63
CUX1-206ENST00000437600 VGLL2Q8N8G2 317 aa11.14□□□□□ -0.63
CUX1-206ENST00000437600 TMEM87AQ8NBN3 555 aa11.14□□□□□ -0.63
CUX1-206ENST00000437600 ARID3AQ99856 593 aa11.14□□□□□ -0.63
CUX1-206ENST00000437600 PTPDC1A2A3K4 754 aa11.14□□□□□ -0.63
CUX1-206ENST00000437600 KRT32Q14532 448 aa11.14□□□□□ -0.63
CUX1-206ENST00000437600 SLC27A3Q5K4L6 730 aa11.14□□□□□ -0.63
CUX1-206ENST00000437600 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.14□□□□□ -0.631e-9■■□□□ 12.2
CUX1-206ENST00000437600 COL4A1P02462 1669 aa11.14□□□□□ -0.63
CUX1-206ENST00000437600 UBE2Q2LH0YL09 131 aa11.14□□□□□ -0.63
CUX1-206ENST00000437600 PLSCR1O15162 318 aa11.14□□□□□ -0.63
CUX1-206ENST00000437600 PDCP20941 246 aa11.14□□□□□ -0.63
CUX1-206ENST00000437600 PDIA3P30101 505 aaKnown RBP11.14□□□□□ -0.63
CUX1-206ENST00000437600 BCAMP50895 628 aa11.14□□□□□ -0.63
CUX1-206ENST00000437600 COL23A1Q86Y22 540 aaPredicted RBP11.14□□□□□ -0.63
CUX1-206ENST00000437600 NSUN7Q8NE18 718 aaKnown RBP11.14□□□□□ -0.63
CUX1-206ENST00000437600 SETDB2Q96T68 719 aa11.14□□□□□ -0.63
CUX1-206ENST00000437600 NFIXQ14938 502 aa11.13□□□□□ -0.63
CUX1-206ENST00000437600 SENP2Q9HC62 589 aa11.13□□□□□ -0.63
CUX1-206ENST00000437600 PIH1D3Q9NQM4 214 aaKnown RBP11.13□□□□□ -0.63
CUX1-206ENST00000437600 HELLSQ9NRZ9 838 aa11.13□□□□□ -0.63
CUX1-206ENST00000437600 ZNF652Q9Y2D9 606 aa11.13□□□□□ -0.63
CUX1-206ENST00000437600 SPEF2Q9C093 1822 aa11.13□□□□□ -0.63
CUX1-206ENST00000437600 GYS1P13807 737 aa11.13□□□□□ -0.63
CUX1-206ENST00000437600 EXOSC10Q01780 885 aaKnown RBP11.13□□□□□ -0.63
CUX1-206ENST00000437600 CCDC152Q4G0S7 254 aa11.13□□□□□ -0.63
CUX1-206ENST00000437600 NBPF5PQ86XG9 351 aaPredicted RBP11.13□□□□□ -0.63
CUX1-206ENST00000437600 CCDC82Q8N4S0 544 aa11.13□□□□□ -0.63
CUX1-206ENST00000437600 AIFM3Q96NN9 605 aa11.13□□□□□ -0.63
CUX1-206ENST00000437600 TNMDQ9H2S6 317 aa11.13□□□□□ -0.63
CUX1-206ENST00000437600 ZKSCAN5Q9Y2L8 839 aa11.13□□□□□ -0.63
CUX1-206ENST00000437600 ABCC12Q96J65 1359 aa11.13□□□□□ -0.63
CUX1-206ENST00000437600 GPAA1O43292 621 aa11.12□□□□□ -0.63
CUX1-206ENST00000437600 MYL10Q9BUA6 226 aa11.12□□□□□ -0.63
CUX1-206ENST00000437600 CASZ1Q86V15 1759 aa11.12□□□□□ -0.63
CUX1-206ENST00000437600 SCN7AQ01118 1682 aa11.12□□□□□ -0.63
CUX1-206ENST00000437600 IGHMBP2P38935 993 aaKnown RBP11.12□□□□□ -0.63
CUX1-206ENST00000437600 PARP10Q53GL7 1025 aa11.12□□□□□ -0.63
CUX1-206ENST00000437600 CELF1Q92879 486 aaKnown RBP11.12□□□□□ -0.63
CUX1-206ENST00000437600 CAMKK2Q96RR4 588 aa11.12□□□□□ -0.63
CUX1-206ENST00000437600 USP28Q96RU2 1077 aa11.12□□□□□ -0.63
CUX1-206ENST00000437600 NUP62CLQ9H1M0 184 aa11.12□□□□□ -0.63
CUX1-206ENST00000437600 WWC3Q9ULE0 1092 aa11.12□□□□□ -0.63
CUX1-206ENST00000437600 DDX60Q8IY21 1712 aaKnown RBP11.12□□□□□ -0.63
CUX1-206ENST00000437600 FDPSP14324 419 aaKnown RBP11.11□□□□□ -0.63
CUX1-206ENST00000437600 CHRNDQ07001 517 aa11.11□□□□□ -0.63
CUX1-206ENST00000437600 RASGRF1Q13972 1273 aa11.11□□□□□ -0.63
CUX1-206ENST00000437600 PUM3Q15397 648 aaKnown RBP11.11□□□□□ -0.63
CUX1-206ENST00000437600 DNTTIP2Q5QJE6 756 aaKnown RBP11.11□□□□□ -0.63
CUX1-206ENST00000437600 TSC1Q92574 1164 aa11.11□□□□□ -0.63
CUX1-206ENST00000437600 FUCA2Q9BTY2 467 aa11.11□□□□□ -0.63
CUX1-206ENST00000437600 JAG2Q9Y219 1238 aa11.11□□□□□ -0.63
CUX1-206ENST00000437600 SMIM22K7EJ46 135 aa11.11□□□□□ -0.63
CUX1-206ENST00000437600 ADD1P35611 737 aaKnown RBP11.11□□□□□ -0.63
CUX1-206ENST00000437600 RESTQ13127 1097 aa11.11□□□□□ -0.63
CUX1-206ENST00000437600 SF3B2Q13435 895 aaKnown RBP11.11□□□□□ -0.63
CUX1-206ENST00000437600 ANO6Q4KMQ2 910 aa11.11□□□□□ -0.63
CUX1-206ENST00000437600 DSCC1Q9BVC3 393 aa11.11□□□□□ -0.63
CUX1-206ENST00000437600 KLF18A0A0U1RQI7 1052 aa11.11□□□□□ -0.63
CUX1-206ENST00000437600 PFKFB2O60825 505 aa11.11□□□□□ -0.63
CUX1-206ENST00000437600 GYG1P46976 350 aa11.11□□□□□ -0.63
CUX1-206ENST00000437600 AKT1S1Q96B36 256 aa11.11□□□□□ -0.63
CUX1-206ENST00000437600 DNAJC25Q9H1X3 360 aa11.11□□□□□ -0.63
CUX1-206ENST00000437600 PRC1O43663 620 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 MAP3K11Q16584 847 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 CLEC4GQ6UXB4 293 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 LPIN2Q92539 896 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 ZKSCAN3Q9BRR0 538 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 NRBP1Q9UHY1 535 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 FBXO3Q9UK99 471 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 ZNF213O14771 459 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 TYRO3Q06418 890 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 ISM2Q6H9L7 571 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 CMTR1Q8N1G2 835 aaKnown RBP11.1□□□□□ -0.63
CUX1-206ENST00000437600 CHMP4CQ96CF2 233 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 SCAND2PQ9GZW5 306 aaPredicted RBP11.1□□□□□ -0.63
CUX1-206ENST00000437600 TOMM22Q9NS69 142 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 CCDC39Q9UFE4 941 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 ABCF2Q9UG63 623 aa11.1□□□□□ -0.63
CUX1-206ENST00000437600 MRVI1Q9Y6F6 885 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms