RNA–Protein interactions for RNA: ENST00000416651.5

NIF3L1-206, Transcript of NGG1 interacting factor 3 like 1, human

TSL 2 BASIC

Gene NIF3L1, Length 967 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NIF3L1-206	ENST00000416651	PTCH2	Q9Y6C5	1203 aa		11.48	□□□□□ -0.57
NIF3L1-206	ENST00000416651	DLG5	Q8TDM6	1919 aa		11.47	□□□□□ -0.57
NIF3L1-206	ENST00000416651	ZNF646	O15015	1829 aa	Predicted RBP	11.47	□□□□□ -0.57
NIF3L1-206	ENST00000416651	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.47	□□□□□ -0.57
NIF3L1-206	ENST00000416651	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.47	□□□□□ -0.57
NIF3L1-206	ENST00000416651	SREBF2	Q12772	1141 aa		11.47	□□□□□ -0.57
NIF3L1-206	ENST00000416651	E2F4	Q16254	413 aa		11.47	□□□□□ -0.57
NIF3L1-206	ENST00000416651	LDLRAD1	Q5T700	205 aa		11.47	□□□□□ -0.57
NIF3L1-206	ENST00000416651	COPS6	Q7L5N1	327 aa		11.47	□□□□□ -0.57
NIF3L1-206	ENST00000416651	XAGE3	Q8WTP9	111 aa		11.47	□□□□□ -0.57
NIF3L1-206	ENST00000416651	PRO3102	Q9H379	93 aa		11.47	□□□□□ -0.57
NIF3L1-206	ENST00000416651	EFCC1	Q9HA90	598 aa		11.47	□□□□□ -0.57
NIF3L1-206	ENST00000416651	ANGEL1	Q9UNK9	670 aa	Known RBP	11.47	□□□□□ -0.57
NIF3L1-206	ENST00000416651	SH3TC1	Q8TE82	1336 aa		11.46	□□□□□ -0.57
NIF3L1-206	ENST00000416651	PITPNM2	Q9BZ72	1349 aa		11.46	□□□□□ -0.57
NIF3L1-206	ENST00000416651	UFL1	O94874	794 aa		11.46	□□□□□ -0.57
NIF3L1-206	ENST00000416651	USP17L8	P0C7I0	530 aa		11.46	□□□□□ -0.57
NIF3L1-206	ENST00000416651	SH3TC2	Q8TF17	1288 aa		11.46	□□□□□ -0.57
NIF3L1-206	ENST00000416651	ZC3H12C	Q9C0D7	883 aa	Known RBP	11.46	□□□□□ -0.57
NIF3L1-206	ENST00000416651	PCDHAC2	Q9Y5I4	1007 aa		11.46	□□□□□ -0.57
NIF3L1-206	ENST00000416651	PSME4	Q14997	1843 aa		11.46	□□□□□ -0.58
NIF3L1-206	ENST00000416651	SSC5D	A1L4H1	1573 aa		11.45	□□□□□ -0.58
NIF3L1-206	ENST00000416651	AOX1	Q06278	1338 aa		11.45	□□□□□ -0.58
NIF3L1-206	ENST00000416651	ATP5J2-PTCD1	G3V325	749 aa		11.45	□□□□□ -0.58
NIF3L1-206	ENST00000416651	WNT10B	O00744	389 aa		11.45	□□□□□ -0.58
NIF3L1-206	ENST00000416651	TCIRG1	Q13488	830 aa		11.45	□□□□□ -0.58
NIF3L1-206	ENST00000416651	AGBL3	Q8NEM8	1001 aa		11.45	□□□□□ -0.58
NIF3L1-206	ENST00000416651	JARID2	Q92833	1246 aa	Predicted RBP	11.45	□□□□□ -0.58
NIF3L1-206	ENST00000416651	SHISA4	Q96DD7	197 aa		11.45	□□□□□ -0.58
NIF3L1-206	ENST00000416651	WNK4	Q96J92	1243 aa		11.45	□□□□□ -0.58
NIF3L1-206	ENST00000416651	ARHGAP39	Q9C0H5	1083 aa		11.45	□□□□□ -0.58
NIF3L1-206	ENST00000416651	SF3B3	Q15393	1217 aa	Known RBP	11.44	□□□□□ -0.58
NIF3L1-206	ENST00000416651	KRT24	Q2M2I5	525 aa		11.44	□□□□□ -0.58
NIF3L1-206	ENST00000416651	SLC4A8	Q2Y0W8	1093 aa		11.44	□□□□□ -0.58
NIF3L1-206	ENST00000416651	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.44	□□□□□ -0.58
NIF3L1-206	ENST00000416651	EYA3	Q99504	573 aa		11.44	□□□□□ -0.58
NIF3L1-206	ENST00000416651	NRG2	O14511	850 aa	Predicted RBP	11.43	□□□□□ -0.58
NIF3L1-206	ENST00000416651	MAP3K7	O43318	606 aa		11.43	□□□□□ -0.58
NIF3L1-206	ENST00000416651	HTATSF1	O43719	755 aa	Known RBP	11.43	□□□□□ -0.58
NIF3L1-206	ENST00000416651	RPS8	P62241	208 aa	Known RBP	11.43	□□□□□ -0.58
NIF3L1-206	ENST00000416651	NBR1	Q14596	966 aa		11.43	□□□□□ -0.58
NIF3L1-206	ENST00000416651	MTFR1	Q15390	333 aa		11.43	□□□□□ -0.58
NIF3L1-206	ENST00000416651	TSR1	Q2NL82	804 aa	Known RBP	11.43	□□□□□ -0.58
NIF3L1-206	ENST00000416651	TMC4	Q7Z404	712 aa		11.43	□□□□□ -0.58
NIF3L1-206	ENST00000416651	DPF3	Q92784	378 aa		11.43	□□□□□ -0.58
NIF3L1-206	ENST00000416651	ERO1A	Q96HE7	468 aa		11.43	□□□□□ -0.58
NIF3L1-206	ENST00000416651	WDR70	Q9NW82	654 aa		11.43	□□□□□ -0.58
NIF3L1-206	ENST00000416651	MANSC4	A6NHS7	340 aa	Predicted RBP	11.42	□□□□□ -0.58
NIF3L1-206	ENST00000416651	SP3	Q02447	781 aa		11.42	□□□□□ -0.58
NIF3L1-206	ENST00000416651	PPP1R18	Q6NYC8	613 aa		11.42	□□□□□ -0.58
NIF3L1-206	ENST00000416651		Q7L0L9	218 aa		11.42	□□□□□ -0.58
NIF3L1-206	ENST00000416651	SLC10A4	Q96EP9	437 aa		11.42	□□□□□ -0.58
NIF3L1-206	ENST00000416651	COL25A1	Q9BXS0	654 aa	Predicted RBP	11.42	□□□□□ -0.58
NIF3L1-206	ENST00000416651	PODXL2	Q9NZ53	605 aa		11.42	□□□□□ -0.58
NIF3L1-206	ENST00000416651	LAMA3	Q16787	3333 aa		11.41	□□□□□ -0.58
NIF3L1-206	ENST00000416651	USP17L3	A6NCW0	530 aa		11.41	□□□□□ -0.58
NIF3L1-206	ENST00000416651	USP17L4	A6NCW7	530 aa		11.41	□□□□□ -0.58
NIF3L1-206	ENST00000416651	SMAP	O00193	183 aa		11.41	□□□□□ -0.58
NIF3L1-206	ENST00000416651	ALDH1A1	P00352	501 aa		11.41	□□□□□ -0.58
NIF3L1-206	ENST00000416651	SLC9C1	Q4G0N8	1177 aa		11.41	□□□□□ -0.58
NIF3L1-206	ENST00000416651	DACT2	Q5SW24	774 aa		11.41	□□□□□ -0.58
NIF3L1-206	ENST00000416651	USP17L1	Q7RTZ2	530 aa		11.41	□□□□□ -0.58
NIF3L1-206	ENST00000416651	ARMC9	Q7Z3E5	817 aa		11.41	□□□□□ -0.58
NIF3L1-206	ENST00000416651	TXNRD3	Q86VQ6	643 aa		11.41	□□□□□ -0.58
NIF3L1-206	ENST00000416651	MTR	Q99707	1265 aa		11.41	□□□□□ -0.58
NIF3L1-206	ENST00000416651	ISCA1	Q9BUE6	129 aa		11.41	□□□□□ -0.58
NIF3L1-206	ENST00000416651	ANKIB1	Q9P2G1	1089 aa		11.41	□□□□□ -0.58
NIF3L1-206	ENST00000416651	GGA1	Q9UJY5	639 aa		11.41	□□□□□ -0.58
NIF3L1-206	ENST00000416651	ERBB4	Q15303	1308 aa		11.4	□□□□□ -0.58
NIF3L1-206	ENST00000416651	ZBED3	Q96IU2	234 aa	Predicted RBP	11.4	□□□□□ -0.58
NIF3L1-206	ENST00000416651	IL21	Q9HBE4	155 aa		11.4	□□□□□ -0.58
NIF3L1-206	ENST00000416651		V9GY48	417 aa	Predicted RBP	11.4	□□□□□ -0.58
NIF3L1-206	ENST00000416651	LAMB1	P07942	1786 aa		11.39	□□□□□ -0.59
NIF3L1-206	ENST00000416651	IRS4	O14654	1257 aa	Predicted RBP	11.39	□□□□□ -0.59
NIF3L1-206	ENST00000416651	KLRK1	P26718	216 aa		11.39	□□□□□ -0.59
NIF3L1-206	ENST00000416651	CTGF	P29279	349 aa		11.39	□□□□□ -0.59
NIF3L1-206	ENST00000416651	NF2	P35240	595 aa		11.39	□□□□□ -0.59
NIF3L1-206	ENST00000416651	HSP90AB3P	Q58FF7	597 aa		11.38	□□□□□ -0.59
NIF3L1-206	ENST00000416651	NBPF12	Q5TAG4	269 aa	Predicted RBP	11.38	□□□□□ -0.59
NIF3L1-206	ENST00000416651	UBE2Q1	Q7Z7E8	422 aa		11.38	□□□□□ -0.59
NIF3L1-206	ENST00000416651	KIAA0825	Q8IV33	1275 aa		11.38	□□□□□ -0.59
NIF3L1-206	ENST00000416651	PNISR	Q8TF01	805 aa	Known RBP	11.38	□□□□□ -0.59
NIF3L1-206	ENST00000416651	CDCA7L	Q96GN5	454 aa		11.38	□□□□□ -0.59
NIF3L1-206	ENST00000416651	STAP2	Q9UGK3	403 aa		11.38	□□□□□ -0.59
NIF3L1-206	ENST00000416651	TSPYL4	Q9UJ04	414 aa		11.38	□□□□□ -0.59
NIF3L1-206	ENST00000416651	ZBTB7B	O15156	539 aa	Predicted RBP	11.37	□□□□□ -0.59
NIF3L1-206	ENST00000416651	USP2	O75604	605 aa	Predicted RBP	11.37	□□□□□ -0.59
NIF3L1-206	ENST00000416651	PPP2R1A	P30153	589 aa		11.37	□□□□□ -0.59
NIF3L1-206	ENST00000416651	MAP3K11	Q16584	847 aa		11.37	□□□□□ -0.59
NIF3L1-206	ENST00000416651	FAM43A	Q8N2R8	423 aa		11.37	□□□□□ -0.59
NIF3L1-206	ENST00000416651	BRI3BP	Q8WY22	251 aa		11.37	□□□□□ -0.59
NIF3L1-206	ENST00000416651	PLEKHF1	Q96S99	279 aa		11.37	□□□□□ -0.59
NIF3L1-206	ENST00000416651	DEFB129	Q9H1M3	183 aa		11.37	□□□□□ -0.59
NIF3L1-206	ENST00000416651	ELP3	Q9H9T3	547 aa		11.37	□□□□□ -0.59
NIF3L1-206	ENST00000416651	CHPF2	Q9P2E5	772 aa		11.37	□□□□□ -0.59
NIF3L1-206	ENST00000416651	OTOF	Q9HC10	1997 aa		11.37	□□□□□ -0.59
NIF3L1-206	ENST00000416651	UNC80	Q8N2C7	3258 aa		11.37	□□□□□ -0.59
NIF3L1-206	ENST00000416651	CLRN2	A0PK11	232 aa		11.36	□□□□□ -0.59
NIF3L1-206	ENST00000416651	TESPA1	A2RU30	521 aa	Predicted RBP	11.36	□□□□□ -0.59
NIF3L1-206	ENST00000416651	ZBTB48	P10074	688 aa	Predicted RBP	11.36	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 68 ms