RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 CCDC85AQ96PX6 553 aaPredicted RBP14.76□□□□□ -0.05
SHMT1-205ENST00000395684 PFKFB1P16118 471 aa14.75□□□□□ -0.05
SHMT1-205ENST00000395684 NLRP12P59046 1061 aa14.75□□□□□ -0.05
SHMT1-205ENST00000395684 ANO1Q5XXA6 986 aa14.75□□□□□ -0.05
SHMT1-205ENST00000395684 SYNE3Q6ZMZ3 975 aa14.75□□□□□ -0.05
SHMT1-205ENST00000395684 NCOA7Q8NI08 942 aa14.75□□□□□ -0.05
SHMT1-205ENST00000395684 NKX2-3Q8TAU0 364 aa14.75□□□□□ -0.05
SHMT1-205ENST00000395684 DENND2AQ9ULE3 1009 aa14.75□□□□□ -0.05
SHMT1-205ENST00000395684 CPLX1O14810 134 aa14.75□□□□□ -0.05
SHMT1-205ENST00000395684 ZFYP08048 801 aaPredicted RBP14.75□□□□□ -0.05
SHMT1-205ENST00000395684 CCDC57Q2TAC2 916 aa14.75□□□□□ -0.05
SHMT1-205ENST00000395684 ISM2Q6H9L7 571 aa14.75□□□□□ -0.05
SHMT1-205ENST00000395684 SYTL4Q96C24 671 aaPredicted RBP14.75□□□□□ -0.05
SHMT1-205ENST00000395684 MORC2Q9Y6X9 1032 aaPredicted RBP14.75□□□□□ -0.05
SHMT1-205ENST00000395684 LAMB4A4D0S4 1761 aa14.74□□□□□ -0.05
SHMT1-205ENST00000395684 CMA1P23946 247 aa14.74□□□□□ -0.05
SHMT1-205ENST00000395684 MARCKSP29966 332 aaPredicted RBP14.74□□□□□ -0.05
SHMT1-205ENST00000395684 APPBP2Q92624 585 aa14.74□□□□□ -0.05
SHMT1-205ENST00000395684 ERO1AQ96HE7 468 aa14.74□□□□□ -0.05
SHMT1-205ENST00000395684 AIFM3Q96NN9 605 aa14.74□□□□□ -0.05
SHMT1-205ENST00000395684 MROH7-TTC4A0A0A0MT08 1334 aa14.74□□□□□ -0.05
SHMT1-205ENST00000395684 SPEF2Q9C093 1822 aa14.74□□□□□ -0.05
SHMT1-205ENST00000395684 ZNF213O14771 459 aa14.74□□□□□ -0.05
SHMT1-205ENST00000395684 ELF2Q15723 593 aa14.74□□□□□ -0.05
SHMT1-205ENST00000395684 LRRFIP1Q32MZ4 808 aaKnown RBP14.74□□□□□ -0.05
SHMT1-205ENST00000395684 PPP1R13BQ96KQ4 1090 aa14.74□□□□□ -0.05
SHMT1-205ENST00000395684 HSD3B7Q9H2F3 369 aa14.74□□□□□ -0.05
SHMT1-205ENST00000395684 PKD1L3Q7Z443 1732 aa14.74□□□□□ -0.05
SHMT1-205ENST00000395684 PLEKHG2Q9H7P9 1386 aa14.74□□□□□ -0.05
SHMT1-205ENST00000395684 NUP188Q5SRE5 1749 aa14.73□□□□□ -0.05
SHMT1-205ENST00000395684 GPAA1O43292 621 aa14.73□□□□□ -0.05
SHMT1-205ENST00000395684 SLU7O95391 586 aaKnown RBP14.73□□□□□ -0.05
SHMT1-205ENST00000395684 RALYLQ86SE5 291 aaKnown RBP14.73□□□□□ -0.05
SHMT1-205ENST00000395684 ZNF397Q8NF99 534 aaPredicted RBP14.73□□□□□ -0.05
SHMT1-205ENST00000395684 NBPF3Q9H094 633 aa14.73□□□□□ -0.05
SHMT1-205ENST00000395684 LMOD1P29536 600 aaPredicted RBP14.73□□□□□ -0.05
SHMT1-205ENST00000395684 SLC39A14Q15043 492 aa14.73□□□□□ -0.05
SHMT1-205ENST00000395684 FBXO38Q6PIJ6 1188 aa14.73□□□□□ -0.05
SHMT1-205ENST00000395684 CCDC150Q8NCX0 1101 aa14.73□□□□□ -0.05
SHMT1-205ENST00000395684 ISCA1Q9BUE6 129 aa14.73□□□□□ -0.05
SHMT1-205ENST00000395684 AKAP2Q9Y2D5 859 aa14.73□□□□□ -0.05
SHMT1-205ENST00000395684 KIF20AO95235 890 aa14.72□□□□□ -0.05
SHMT1-205ENST00000395684 ATP1A3P13637 1013 aa14.72□□□□□ -0.05
SHMT1-205ENST00000395684 SFPQP23246 707 aaKnown RBP eCLIP14.72□□□□□ -0.05
SHMT1-205ENST00000395684 KIF2AO00139 706 aaPredicted RBP14.72□□□□□ -0.05
SHMT1-205ENST00000395684 PSDA5PKW4 1024 aaPredicted RBP14.71□□□□□ -0.05
SHMT1-205ENST00000395684 FANCCQ00597 558 aa14.71□□□□□ -0.05
SHMT1-205ENST00000395684 SYT10Q6XYQ8 523 aa14.71□□□□□ -0.05
SHMT1-205ENST00000395684 FAM89AQ96GI7 184 aa14.71□□□□□ -0.05
SHMT1-205ENST00000395684 L2HGDHQ9H9P8 463 aa14.71□□□□□ -0.05
SHMT1-205ENST00000395684 NPHP1O15259 732 aa14.71□□□□□ -0.05
SHMT1-205ENST00000395684 ATF3P18847 181 aa14.71□□□□□ -0.05
SHMT1-205ENST00000395684 RXRAP19793 462 aa14.71□□□□□ -0.05
SHMT1-205ENST00000395684 LRRN4CLQ8ND94 238 aa14.71□□□□□ -0.05
SHMT1-205ENST00000395684 TAOK2Q9UL54 1235 aa14.71□□□□□ -0.05
SHMT1-205ENST00000395684 CPDO75976 1380 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 IKBKBO14920 756 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 SYKP43405 635 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 TCIRG1Q13488 830 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 SHC4Q6S5L8 630 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 CYB5R4Q7L1T6 521 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 VPS37DQ86XT2 251 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 ZCRB1Q8TBF4 217 aaKnown RBP14.7□□□□□ -0.06
SHMT1-205ENST00000395684 ALG1Q9BT22 464 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 SENP2Q9HC62 589 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 TUBE1Q9UJT0 475 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 HPSEQ9Y251 543 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 KCPQ6ZWJ8 1503 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 WDR19Q8NEZ3 1342 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 ERVV-2B6SEH9 535 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 MCAMP43121 646 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 KCNJ6P48051 423 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 TPM4P67936 248 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 CCDC93Q567U6 631 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 TBC1D10CQ8IV04 446 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 DPF2Q92785 391 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 TIGD1Q96MW7 591 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 FBXO3Q9UK99 471 aa14.7□□□□□ -0.06
SHMT1-205ENST00000395684 CDC27P30260 824 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 PTPAQ15257 358 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 KRT40Q6A162 431 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 PHKBQ93100 1093 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 FAM53CQ9NYF3 392 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 ANGEL1Q9UNK9 670 aaKnown RBP14.69□□□□□ -0.06
SHMT1-205ENST00000395684 ZNF330Q9Y3S2 320 aaPredicted RBP14.69□□□□□ -0.06
SHMT1-205ENST00000395684 ZMYM6O95789 1325 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 PCDH11XQ9BZA7 1347 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 PCDH11YQ9BZA8 1340 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 ERCC6LQ2NKX8 1250 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 SYNE4Q8N205 404 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 CSF1RP07333 972 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 METAP2P50579 478 aaKnown RBP eCLIP14.69□□□□□ -0.06
SHMT1-205ENST00000395684 IFIT5Q13325 482 aaKnown RBP14.69□□□□□ -0.06
SHMT1-205ENST00000395684 PNOCQ13519 176 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 TAF7LQ5H9L4 462 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 CLIC6Q96NY7 704 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 MAP3K14Q99558 947 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 ZNF446Q9NWS9 450 aa14.69□□□□□ -0.06
SHMT1-205ENST00000395684 SH2B2O14492 632 aaPredicted RBP14.68□□□□□ -0.06
SHMT1-205ENST00000395684 SLFN14P0C7P3 912 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms