RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 CRKP46108 304 aa17.4■□□□□ 0.38
CXCL12-202ENST00000374426 RABL6Q3YEC7 729 aaPredicted RBP17.4■□□□□ 0.38
CXCL12-202ENST00000374426 FBXO33Q7Z6M2 555 aa17.4■□□□□ 0.38
CXCL12-202ENST00000374426 FAM9BQ8IZU0 186 aa17.4■□□□□ 0.38
CXCL12-202ENST00000374426 OPTNQ96CV9 577 aa17.4■□□□□ 0.38
CXCL12-202ENST00000374426 TMEM39BQ9GZU3 492 aa17.4■□□□□ 0.38
CXCL12-202ENST00000374426 ELP3Q9H9T3 547 aa17.4■□□□□ 0.38
CXCL12-202ENST00000374426 ARAP2Q8WZ64 1704 aa17.4■□□□□ 0.38
CXCL12-202ENST00000374426 OTOFQ9HC10 1997 aa17.4■□□□□ 0.38
CXCL12-202ENST00000374426 TCP10L2B9ZVM9 353 aa17.39■□□□□ 0.37
CXCL12-202ENST00000374426 LRRC24Q50LG9 513 aa17.39■□□□□ 0.37
CXCL12-202ENST00000374426 OTUD7BQ6GQQ9 843 aa17.39■□□□□ 0.37
CXCL12-202ENST00000374426 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.39■□□□□ 0.37
CXCL12-202ENST00000374426 ANKRD44Q8N8A2 993 aa17.39■□□□□ 0.37
CXCL12-202ENST00000374426 MS4A4AQ96JQ5 239 aa17.39■□□□□ 0.37
CXCL12-202ENST00000374426 IQSEC3Q9UPP2 1182 aaPredicted RBP17.39■□□□□ 0.37
CXCL12-202ENST00000374426 ZNF521Q96K83 1311 aa17.39■□□□□ 0.37
CXCL12-202ENST00000374426 CAP1Q01518 475 aa17.38■□□□□ 0.37
CXCL12-202ENST00000374426 VGLL2Q8N8G2 317 aa17.38■□□□□ 0.37
CXCL12-202ENST00000374426 CD99L2Q8TCZ2 262 aa17.38■□□□□ 0.37
CXCL12-202ENST00000374426 CNKSR2Q8WXI2 1034 aa17.38■□□□□ 0.37
CXCL12-202ENST00000374426 ERO1AQ96HE7 468 aa17.38■□□□□ 0.37
CXCL12-202ENST00000374426 CHAF1AQ13111 956 aaPredicted RBP17.37■□□□□ 0.37
CXCL12-202ENST00000374426 VGLL4Q14135 290 aa17.37■□□□□ 0.37
CXCL12-202ENST00000374426 METTL24Q5JXM2 366 aa17.37■□□□□ 0.37
CXCL12-202ENST00000374426 VPS37DQ86XT2 251 aa17.37■□□□□ 0.37
CXCL12-202ENST00000374426 MRPL50Q8N5N7 158 aaKnown RBP17.37■□□□□ 0.37
CXCL12-202ENST00000374426 PTPN22Q9Y2R2 807 aa17.37■□□□□ 0.37
CXCL12-202ENST00000374426 POTEFA5A3E0 1075 aa17.36■□□□□ 0.37
CXCL12-202ENST00000374426 PDE8BO95263 885 aa17.36■□□□□ 0.37
CXCL12-202ENST00000374426 TNNI2P48788 182 aa17.36■□□□□ 0.37
CXCL12-202ENST00000374426 HDLBPQ00341 1268 aaKnown RBP17.36■□□□□ 0.37
CXCL12-202ENST00000374426 SP3Q02447 781 aa17.36■□□□□ 0.37
CXCL12-202ENST00000374426 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.36■□□□□ 0.37
CXCL12-202ENST00000374426 BRI3BPQ8WY22 251 aa17.36■□□□□ 0.37
CXCL12-202ENST00000374426 PCDH10Q9P2E7 1040 aa17.36■□□□□ 0.37
CXCL12-202ENST00000374426 ZNF316A6NFI3 1004 aaPredicted RBP17.35■□□□□ 0.37
CXCL12-202ENST00000374426 BCAMP50895 628 aa17.35■□□□□ 0.37
CXCL12-202ENST00000374426 CACNB3P54284 484 aa17.35■□□□□ 0.37
CXCL12-202ENST00000374426 MAP3K9P80192 1104 aa17.35■□□□□ 0.37
CXCL12-202ENST00000374426 CAVIN4Q5BKX8 364 aa17.35■□□□□ 0.37
CXCL12-202ENST00000374426 INTS3Q68E01 1043 aaKnown RBP17.35■□□□□ 0.37
CXCL12-202ENST00000374426 KLHDC4Q8TBB5 520 aa17.35■□□□□ 0.37
CXCL12-202ENST00000374426 TBC1D22AQ8WUA7 517 aa17.35■□□□□ 0.37
CXCL12-202ENST00000374426 EFCC1Q9HA90 598 aa17.35■□□□□ 0.37
CXCL12-202ENST00000374426 FRAT2O75474 233 aaPredicted RBP17.34■□□□□ 0.37
CXCL12-202ENST00000374426 TEKT1Q969V4 418 aa17.34■□□□□ 0.37
CXCL12-202ENST00000374426 PTPRCP08575 1304 aa17.33■□□□□ 0.36
CXCL12-202ENST00000374426 CCL15-CCL14A0A0B4J2E2 113 aa17.33■□□□□ 0.36
CXCL12-202ENST00000374426 GTF2A2P52657 109 aa17.33■□□□□ 0.36
CXCL12-202ENST00000374426 CCL15Q16663 113 aa17.33■□□□□ 0.36
CXCL12-202ENST00000374426 ARMC5Q96C12 935 aa17.33■□□□□ 0.36
CXCL12-202ENST00000374426 OTUD5Q96G74 571 aa17.33■□□□□ 0.36
CXCL12-202ENST00000374426 ZDHHC15Q96MV8 337 aa17.33■□□□□ 0.36
CXCL12-202ENST00000374426 USP44Q9H0E7 712 aa17.33■□□□□ 0.36
CXCL12-202ENST00000374426 CSADQ9Y600 493 aa17.33■□□□□ 0.36
CXCL12-202ENST00000374426 FGFR2P21802 821 aa17.32■□□□□ 0.36
CXCL12-202ENST00000374426 TAF1CQ15572 869 aaPredicted RBP17.32■□□□□ 0.36
CXCL12-202ENST00000374426 APOBEC3HQ6NTF7 200 aaKnown RBP17.32■□□□□ 0.36
CXCL12-202ENST00000374426 FAM43AQ8N2R8 423 aa17.32■□□□□ 0.36
CXCL12-202ENST00000374426 MRIQ9BWK5 157 aa17.32■□□□□ 0.36
CXCL12-202ENST00000374426 SNCAIPQ9Y6H5 919 aa17.32■□□□□ 0.36
CXCL12-202ENST00000374426 KIF16BQ96L93 1317 aa17.31■□□□□ 0.36
CXCL12-202ENST00000374426 SPDYE5A6NIY4 337 aa17.31■□□□□ 0.36
CXCL12-202ENST00000374426 PUM3Q15397 648 aaKnown RBP17.31■□□□□ 0.36
CXCL12-202ENST00000374426 FAM83AQ86UY5 434 aa17.31■□□□□ 0.36
CXCL12-202ENST00000374426 SSH1Q8WYL5 1049 aa17.31■□□□□ 0.36
CXCL12-202ENST00000374426 ZFYVE28Q9HCC9 887 aa17.31■□□□□ 0.36
CXCL12-202ENST00000374426 SUGT1Q9Y2Z0 365 aa17.31■□□□□ 0.36
CXCL12-202ENST00000374426 IFIT1P09914 478 aaKnown RBP17.3■□□□□ 0.36
CXCL12-202ENST00000374426 RFX5P48382 616 aaPredicted RBP17.3■□□□□ 0.36
CXCL12-202ENST00000374426 FKBP1CQ5VVH2 108 aa17.3■□□□□ 0.36
CXCL12-202ENST00000374426 WRNIP1Q96S55 665 aa17.3■□□□□ 0.36
CXCL12-202ENST00000374426 TMOD2Q9NZR1 351 aa17.3■□□□□ 0.36
CXCL12-202ENST00000374426 MAST3O60307 1309 aa17.29■□□□□ 0.36
CXCL12-202ENST00000374426 HHIPL2Q6UWX4 724 aa17.29■□□□□ 0.36
CXCL12-202ENST00000374426 ERO1BQ86YB8 467 aa17.29■□□□□ 0.36
CXCL12-202ENST00000374426 ZKSCAN4Q969J2 545 aaPredicted RBP17.29■□□□□ 0.36
CXCL12-202ENST00000374426 RBBP6Q7Z6E9 1792 aaKnown RBP17.29■□□□□ 0.36
CXCL12-202ENST00000374426 CEP290O15078 2479 aa17.28■□□□□ 0.36
CXCL12-202ENST00000374426 E9PSI1 815 aa17.28■□□□□ 0.36
CXCL12-202ENST00000374426 EYA2O00167 538 aa17.28■□□□□ 0.36
CXCL12-202ENST00000374426 IRF6O14896 467 aa17.28■□□□□ 0.36
CXCL12-202ENST00000374426 CETPP11597 493 aa17.28■□□□□ 0.36
CXCL12-202ENST00000374426 EN2P19622 333 aaPredicted RBP17.28■□□□□ 0.36
CXCL12-202ENST00000374426 ZNF333Q96JL9 665 aa17.28■□□□□ 0.36
CXCL12-202ENST00000374426 PTCH2Q9Y6C5 1203 aa17.28■□□□□ 0.36
CXCL12-202ENST00000374426 RPAP1Q9BWH6 1393 aaPredicted RBP17.28■□□□□ 0.36
CXCL12-202ENST00000374426 BTBD19C9JJ37 291 aa17.27■□□□□ 0.36
CXCL12-202ENST00000374426 ZEB1P37275 1124 aaPredicted RBP17.27■□□□□ 0.36
CXCL12-202ENST00000374426 ATG9AQ7Z3C6 839 aa17.27■□□□□ 0.36
CXCL12-202ENST00000374426 LPIN2Q92539 896 aa17.27■□□□□ 0.36
CXCL12-202ENST00000374426 HOOK2Q96ED9 719 aa17.27■□□□□ 0.36
CXCL12-202ENST00000374426 TLR2O60603 784 aa17.26■□□□□ 0.35
CXCL12-202ENST00000374426 SLC5A1P13866 664 aa17.26■□□□□ 0.35
CXCL12-202ENST00000374426 PPIL2Q13356 520 aa17.26■□□□□ 0.35
CXCL12-202ENST00000374426 SNAPC2Q13487 334 aa17.26■□□□□ 0.35
CXCL12-202ENST00000374426 ARHGEF6Q15052 776 aa17.26■□□□□ 0.35
CXCL12-202ENST00000374426 DCAF15Q66K64 600 aa17.26■□□□□ 0.35
CXCL12-202ENST00000374426 MIGA2Q7L4E1 593 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms