RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 CYP7A1P22680 504 aa21.56■■□□□ 1.04
VIM-201ENST00000224237 CHRNA5P30532 468 aa21.56■■□□□ 1.04
VIM-201ENST00000224237 ZNF622Q969S3 477 aaKnown RBP eCLIP21.56■■□□□ 1.043e-17■□□□□ 9.6
VIM-201ENST00000224237 JAG2Q9Y219 1238 aa21.56■■□□□ 1.04
VIM-201ENST00000224237 PATL2C9JE40 543 aaKnown RBP21.55■■□□□ 1.04
VIM-201ENST00000224237 ZNF213O14771 459 aa21.55■■□□□ 1.04
VIM-201ENST00000224237 APPP05067 770 aa21.55■■□□□ 1.04
VIM-201ENST00000224237 RAB3GAP1Q15042 981 aa21.55■■□□□ 1.04
VIM-201ENST00000224237 TDRD7Q8NHU6 1098 aaKnown RBP21.55■■□□□ 1.04
VIM-201ENST00000224237 POLLQ9UGP5 575 aa21.55■■□□□ 1.04
VIM-201ENST00000224237 CHAF1AQ13111 956 aaPredicted RBP21.54■■□□□ 1.04
VIM-201ENST00000224237 COL9A3Q14050 684 aaPredicted RBP21.54■■□□□ 1.04
VIM-201ENST00000224237 ALX1Q15699 326 aa21.54■■□□□ 1.04
VIM-201ENST00000224237 NAA16Q6N069 864 aaPredicted RBP21.54■■□□□ 1.04
VIM-201ENST00000224237 TBC1D16Q8TBP0 767 aa21.54■■□□□ 1.04
VIM-201ENST00000224237 ARMT1Q9H993 441 aa21.54■■□□□ 1.04
VIM-201ENST00000224237 SALL1Q9NSC2 1324 aa21.54■■□□□ 1.04
VIM-201ENST00000224237 A0A0G2JLW4 131 aa21.54■■□□□ 1.04
VIM-201ENST00000224237 NUCB2P80303 420 aa21.54■■□□□ 1.04
VIM-201ENST00000224237 DHX32Q7L7V1 743 aaKnown RBP21.54■■□□□ 1.04
VIM-201ENST00000224237 WDR66Q8TBY9 1149 aa21.54■■□□□ 1.04
VIM-201ENST00000224237 DUOX1Q9NRD9 1551 aa21.53■■□□□ 1.04
VIM-201ENST00000224237 CCDC88AQ3V6T2 1871 aa21.53■■□□□ 1.04
VIM-201ENST00000224237 SPTY2D1Q68D10 685 aaPredicted RBP21.53■■□□□ 1.04
VIM-201ENST00000224237 LCORLQ8N3X6 602 aa21.53■■□□□ 1.04
VIM-201ENST00000224237 NSUN4Q96CB9 384 aaKnown RBP21.53■■□□□ 1.04
VIM-201ENST00000224237 TCEANC2Q96MN5 208 aa21.53■■□□□ 1.04
VIM-201ENST00000224237 TMX4Q9H1E5 349 aaPredicted RBP21.53■■□□□ 1.04
VIM-201ENST00000224237 H0YIN7 160 aa21.52■■□□□ 1.04
VIM-201ENST00000224237 HAND2P61296 217 aa21.52■■□□□ 1.04
VIM-201ENST00000224237 TOB2Q14106 344 aaPredicted RBP21.52■■□□□ 1.04
VIM-201ENST00000224237 ADGRA1Q86SQ6 560 aa21.52■■□□□ 1.04
VIM-201ENST00000224237 LARP6Q9BRS8 491 aaKnown RBP21.52■■□□□ 1.04
VIM-201ENST00000224237 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.52■■□□□ 1.04
VIM-201ENST00000224237 GOLGB1Q14789 3259 aaKnown RBP21.52■■□□□ 1.04
VIM-201ENST00000224237 MAGEB6P1A0A0J9YX57 407 aa21.52■■□□□ 1.03
VIM-201ENST00000224237 C6orf229H3BNL8 230 aa21.52■■□□□ 1.03
VIM-201ENST00000224237 STYK1Q6J9G0 422 aa21.52■■□□□ 1.03
VIM-201ENST00000224237 IFNL3Q8IZI9 196 aa21.52■■□□□ 1.03
VIM-201ENST00000224237 MIGA1Q8NAN2 632 aa21.52■■□□□ 1.03
VIM-201ENST00000224237 NACAP1Q9BZK3 213 aa21.52■■□□□ 1.03
VIM-201ENST00000224237 NAPBQ9H115 298 aa21.52■■□□□ 1.03
VIM-201ENST00000224237 CD209Q9NNX6 404 aa21.52■■□□□ 1.03
VIM-201ENST00000224237 IL1R1P14778 569 aa21.51■■□□□ 1.03
VIM-201ENST00000224237 MECOMQ03112 1051 aa21.51■■□□□ 1.03
VIM-201ENST00000224237 EPB41L4AQ9HCS5 686 aaPredicted RBP21.51■■□□□ 1.03
VIM-201ENST00000224237 TPCN1Q9ULQ1 816 aa21.51■■□□□ 1.03
VIM-201ENST00000224237 SLC4A4Q9Y6R1 1079 aa21.51■■□□□ 1.03
VIM-201ENST00000224237 GSG1L2A8MUP6 293 aa21.5■■□□□ 1.03
VIM-201ENST00000224237 ZBTB7AO95365 584 aa21.5■■□□□ 1.03
VIM-201ENST00000224237 LARGE1O95461 756 aa21.5■■□□□ 1.03
VIM-201ENST00000224237 PRDX5P30044 214 aa21.5■■□□□ 1.03
VIM-201ENST00000224237 ME3Q16798 604 aa21.5■■□□□ 1.03
VIM-201ENST00000224237 Q6ZUG5 572 aa21.5■■□□□ 1.03
VIM-201ENST00000224237 C10orf71Q711Q0 1435 aa21.5■■□□□ 1.03
VIM-201ENST00000224237 SLX4Q8IY92 1834 aa21.5■■□□□ 1.03
VIM-201ENST00000224237 KIAA1551Q9HCM1 1747 aa21.5■■□□□ 1.03
VIM-201ENST00000224237 ZNF384Q8TF68 577 aa21.49■■□□□ 1.03
VIM-201ENST00000224237 SLC16A10Q8TF71 515 aa21.49■■□□□ 1.03
VIM-201ENST00000224237 RIOK1Q9BRS2 568 aaKnown RBP21.49■■□□□ 1.03
VIM-201ENST00000224237 FGD1P98174 961 aa21.49■■□□□ 1.03
VIM-201ENST00000224237 EXOSC10Q01780 885 aaKnown RBP21.49■■□□□ 1.03
VIM-201ENST00000224237 MPNDQ8N594 471 aa21.49■■□□□ 1.03
VIM-201ENST00000224237 NCOA7Q8NI08 942 aa21.49■■□□□ 1.03
VIM-201ENST00000224237 TNPO1Q92973 898 aaKnown RBP21.49■■□□□ 1.03
VIM-201ENST00000224237 ZNF219Q9P2Y4 722 aaPredicted RBP21.49■■□□□ 1.03
VIM-201ENST00000224237 RALYLQ86SE5 291 aaKnown RBP21.48■■□□□ 1.03
VIM-201ENST00000224237 DZIP1Q86YF9 867 aaKnown RBP21.48■■□□□ 1.03
VIM-201ENST00000224237 AGXT2Q9BYV1 514 aa21.48■■□□□ 1.03
VIM-201ENST00000224237 RIMBP2O15034 1052 aa21.47■■□□□ 1.03
VIM-201ENST00000224237 LDHBP07195 334 aaKnown RBP21.47■■□□□ 1.03
VIM-201ENST00000224237 TDO2P48775 406 aa21.47■■□□□ 1.03
VIM-201ENST00000224237 TRDNQ13061 729 aa21.47■■□□□ 1.03
VIM-201ENST00000224237 DPP8Q6V1X1 898 aaPredicted RBP21.47■■□□□ 1.03
VIM-201ENST00000224237 CCDC83Q8IWF9 413 aa21.47■■□□□ 1.03
VIM-201ENST00000224237 FBXL16Q8N461 479 aa21.47■■□□□ 1.03
VIM-201ENST00000224237 UPF1Q92900 1129 aaKnown RBP eCLIP21.47■■□□□ 1.03
VIM-201ENST00000224237 PRKAB2O43741 272 aa21.47■■□□□ 1.03
VIM-201ENST00000224237 NBPF3Q9H094 633 aa21.47■■□□□ 1.03
VIM-201ENST00000224237 TIAM2Q8IVF5 1701 aa21.47■■□□□ 1.03
VIM-201ENST00000224237 MCM5P33992 734 aa21.46■■□□□ 1.03
VIM-201ENST00000224237 R3HDM1Q15032 1099 aaKnown RBP21.46■■□□□ 1.03
VIM-201ENST00000224237 MB21D2Q8IYB1 491 aaPredicted RBP21.46■■□□□ 1.03
VIM-201ENST00000224237 CNKSR1Q969H4 720 aa21.46■■□□□ 1.03
VIM-201ENST00000224237 GBP4Q96PP9 640 aa21.46■■□□□ 1.03
VIM-201ENST00000224237 ATF5Q9Y2D1 282 aaPredicted RBP21.46■■□□□ 1.03
VIM-201ENST00000224237 WDR19Q8NEZ3 1342 aa21.46■■□□□ 1.03
VIM-201ENST00000224237 TBC1D10CQ8IV04 446 aa21.45■■□□□ 1.02
VIM-201ENST00000224237 BRF1Q92994 677 aa21.45■■□□□ 1.02
VIM-201ENST00000224237 LRRC2Q9BYS8 371 aa21.45■■□□□ 1.02
VIM-201ENST00000224237 COA1Q9GZY4 146 aa21.45■■□□□ 1.02
VIM-201ENST00000224237 SMC3Q9UQE7 1217 aa21.45■■□□□ 1.02
VIM-201ENST00000224237 CHD4Q14839 1912 aa21.45■■□□□ 1.02
VIM-201ENST00000224237 GSTO1P78417 241 aa21.45■■□□□ 1.02
VIM-201ENST00000224237 GRIK5Q16478 980 aa21.45■■□□□ 1.02
VIM-201ENST00000224237 ZC3H12CQ9C0D7 883 aaKnown RBP21.45■■□□□ 1.02
VIM-201ENST00000224237 DYNLL1P63167 89 aaKnown RBP21.44■■□□□ 1.02
VIM-201ENST00000224237 ST3GAL1Q11201 340 aa21.44■■□□□ 1.02
VIM-201ENST00000224237 PKP1Q13835 747 aa21.44■■□□□ 1.02
VIM-201ENST00000224237 TBC1D22AQ8WUA7 517 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms