RNA–Protein interactions for RNA: ENST00000222823.8

NOD1-201, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOD1, Length 4,499 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-201ENST00000222823 AOPEPQ8N6M6 819 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 PSMA7O14818 248 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 MYO1BO43795 1136 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 CALM1P0DP23 149 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 CALM2P0DP24 149 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 CALM3P0DP25 149 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 HLTFQ14527 1009 aaKnown RBP eCLIP13.13□□□□□ -0.31
NOD1-201ENST00000222823 SPAG5Q96R06 1193 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 CCDC113Q9H0I3 377 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 STAP2Q9UGK3 403 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 RTCBQ9Y3I0 505 aaKnown RBP13.13□□□□□ -0.31
NOD1-201ENST00000222823 CPA1P15085 419 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 HSPA4P34932 840 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 NAPAP54920 295 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 TYRO3Q06418 890 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 PPP4R3BQ5MIZ7 849 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 FRMPD1Q5SYB0 1578 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 CEP135Q66GS9 1140 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 OGFOD1Q8N543 542 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 PRIMPOLQ96LW4 560 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 CTAGE1Q96RT6 745 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 NAA15Q9BXJ9 866 aaKnown RBP13.13□□□□□ -0.31
NOD1-201ENST00000222823 ZSWIM4Q9H7M6 989 aa13.13□□□□□ -0.31
NOD1-201ENST00000222823 PCDH11XQ9BZA7 1347 aa13.12□□□□□ -0.31
NOD1-201ENST00000222823 PCDH11YQ9BZA8 1340 aa13.12□□□□□ -0.31
NOD1-201ENST00000222823 ORAI2Q96SN7 254 aa13.12□□□□□ -0.31
NOD1-201ENST00000222823 A0A1B0GUL7 405 aa13.12□□□□□ -0.31
NOD1-201ENST00000222823 IFFO1Q0D2I5 559 aa13.12□□□□□ -0.31
NOD1-201ENST00000222823 ZNF804AQ7Z570 1209 aa13.12□□□□□ -0.31
NOD1-201ENST00000222823 PLBD2Q8NHP8 589 aa13.12□□□□□ -0.31
NOD1-201ENST00000222823 DYDC1Q8WWB3 177 aa13.12□□□□□ -0.31
NOD1-201ENST00000222823 CTNNBL1Q8WYA6 563 aaPredicted RBP13.12□□□□□ -0.31
NOD1-201ENST00000222823 PAXBP1Q9Y5B6 917 aa13.12□□□□□ -0.31
NOD1-201ENST00000222823 PICALMQ13492 652 aa13.12□□□□□ -0.31
NOD1-201ENST00000222823 NOLC1Q14978 699 aaKnown RBP eCLIP13.12□□□□□ -0.31
NOD1-201ENST00000222823 DHX58Q96C10 678 aa13.12□□□□□ -0.31
NOD1-201ENST00000222823 METTL22Q9BUU2 404 aaPredicted RBP13.12□□□□□ -0.31
NOD1-201ENST00000222823 DNAI2Q9GZS0 605 aa13.11□□□□□ -0.31
NOD1-201ENST00000222823 TTC12Q9H892 705 aaPredicted RBP13.11□□□□□ -0.31
NOD1-201ENST00000222823 JADE2Q9NQC1 790 aa13.11□□□□□ -0.31
NOD1-201ENST00000222823 BRD1O95696 1058 aa13.11□□□□□ -0.31
NOD1-201ENST00000222823 DBNDD2Q9BQY9 259 aa13.11□□□□□ -0.31
NOD1-201ENST00000222823 SNX14Q9Y5W7 946 aa13.11□□□□□ -0.31
NOD1-201ENST00000222823 ARHGEF28Q8N1W1 1705 aaKnown RBP13.11□□□□□ -0.31
NOD1-201ENST00000222823 ASIC1P78348 528 aa13.11□□□□□ -0.31
NOD1-201ENST00000222823 ZKSCAN5Q9Y2L8 839 aa13.11□□□□□ -0.31
NOD1-201ENST00000222823 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.11□□□□□ -0.31
NOD1-201ENST00000222823 POTEB2H3BUK9 544 aa13.11□□□□□ -0.31
NOD1-201ENST00000222823 POLR3GO15318 223 aaPredicted RBP13.11□□□□□ -0.31
NOD1-201ENST00000222823 PLCG2P16885 1265 aa13.11□□□□□ -0.31
NOD1-201ENST00000222823 PRPF4BQ13523 1007 aaKnown RBP13.11□□□□□ -0.31
NOD1-201ENST00000222823 BRAPQ7Z569 592 aa13.11□□□□□ -0.31
NOD1-201ENST00000222823 KLHDC4Q8TBB5 520 aa13.11□□□□□ -0.31
NOD1-201ENST00000222823 C6orf50Q9HD87 102 aa13.11□□□□□ -0.31
NOD1-201ENST00000222823 RXRAP19793 462 aa13.1□□□□□ -0.31
NOD1-201ENST00000222823 RBSNQ9H1K0 784 aa13.1□□□□□ -0.31
NOD1-201ENST00000222823 SH3TC1Q8TE82 1336 aa13.1□□□□□ -0.31
NOD1-201ENST00000222823 EHBP1Q8NDI1 1231 aa13.1□□□□□ -0.31
NOD1-201ENST00000222823 BTG4Q9NY30 223 aa13.1□□□□□ -0.31
NOD1-201ENST00000222823 CYLC1P35663 651 aaPredicted RBP13.1□□□□□ -0.31
NOD1-201ENST00000222823 HELLSQ9NRZ9 838 aa13.1□□□□□ -0.31
NOD1-201ENST00000222823 SHTN1A0MZ66 631 aa13.09□□□□□ -0.31
NOD1-201ENST00000222823 TNNI3KQ59H18 835 aa13.09□□□□□ -0.31
NOD1-201ENST00000222823 DNAI1Q9UI46 699 aa13.09□□□□□ -0.31
NOD1-201ENST00000222823 FPGT-TNNI3KV9GXZ4 949 aa13.09□□□□□ -0.31
NOD1-201ENST00000222823 PREX1Q8TCU6 1659 aa13.09□□□□□ -0.31
NOD1-201ENST00000222823 CCDC174Q6PII3 467 aa13.09□□□□□ -0.31
NOD1-201ENST00000222823 GOPCQ9HD26 462 aa13.09□□□□□ -0.31
NOD1-201ENST00000222823 RTL9Q8NET4 1388 aa13.09□□□□□ -0.31
NOD1-201ENST00000222823 COL3A1P02461 1466 aaPredicted RBP13.09□□□□□ -0.31
NOD1-201ENST00000222823 MBD4O95243 580 aa13.09□□□□□ -0.31
NOD1-201ENST00000222823 HDAC9Q9UKV0 1011 aa13.09□□□□□ -0.31
NOD1-201ENST00000222823 DYNC1I1O14576 645 aa13.09□□□□□ -0.31
NOD1-201ENST00000222823 LDHBP07195 334 aaKnown RBP13.09□□□□□ -0.31
NOD1-201ENST00000222823 ANKRD2Q9GZV1 360 aa13.09□□□□□ -0.31
NOD1-201ENST00000222823 A1BGP04217 495 aa13.08□□□□□ -0.32
NOD1-201ENST00000222823 KRT79Q5XKE5 535 aa13.08□□□□□ -0.32
NOD1-201ENST00000222823 HOOK3Q86VS8 718 aa13.08□□□□□ -0.32
NOD1-201ENST00000222823 TAOK3Q9H2K8 898 aa13.08□□□□□ -0.32
NOD1-201ENST00000222823 ADGRB2O60241 1585 aa13.08□□□□□ -0.32
NOD1-201ENST00000222823 CDC42BPGQ6DT37 1551 aa13.08□□□□□ -0.32
NOD1-201ENST00000222823 CTNNA2P26232 953 aa13.08□□□□□ -0.32
NOD1-201ENST00000222823 BEND3Q5T5X7 828 aa13.08□□□□□ -0.32
NOD1-201ENST00000222823 PALD1Q9ULE6 856 aa13.08□□□□□ -0.32
NOD1-201ENST00000222823 GAS2L3Q86XJ1 694 aa13.08□□□□□ -0.32
NOD1-201ENST00000222823 AGLP35573 1532 aa13.08□□□□□ -0.32
NOD1-201ENST00000222823 ITGA6P23229 1130 aa13.07□□□□□ -0.32
NOD1-201ENST00000222823 GNA11P29992 359 aa13.07□□□□□ -0.32
NOD1-201ENST00000222823 PKP1Q13835 747 aa13.07□□□□□ -0.32
NOD1-201ENST00000222823 CCDC172P0C7W6 258 aa13.07□□□□□ -0.32
NOD1-201ENST00000222823 TNNI2P48788 182 aa13.07□□□□□ -0.32
NOD1-201ENST00000222823 ATL3Q6DD88 541 aa13.07□□□□□ -0.32
NOD1-201ENST00000222823 CCDC129Q6ZRS4 1044 aa13.07□□□□□ -0.32
NOD1-201ENST00000222823 JAG2Q9Y219 1238 aa13.07□□□□□ -0.32
NOD1-201ENST00000222823 KRT2P35908 639 aa13.07□□□□□ -0.32
NOD1-201ENST00000222823 BMS1Q14692 1282 aaKnown RBP13.07□□□□□ -0.32
NOD1-201ENST00000222823 SMARCC2Q8TAQ2 1214 aa13.07□□□□□ -0.32
NOD1-201ENST00000222823 ZKSCAN3Q9BRR0 538 aa13.07□□□□□ -0.32
NOD1-201ENST00000222823 MMRN2Q9H8L6 949 aa13.07□□□□□ -0.32
NOD1-201ENST00000222823 BCCIPQ9P287 314 aaKnown RBP eCLIP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms