RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Ccdc7Q9D541 371 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Col4a5Q63ZW6 1691 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Cyp2d34L7N463 504 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Usp48Q3V0C5 1052 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 DekQ7TNV0 380 aaKnown RBP10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 St18Q80TY4 1045 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Htatsf1Q8BGC0 757 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Pdzph1Q8BGR1 1238 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Ttc12Q8BW49 704 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Myl6bQ8CI43 207 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Smc3Q9CW03 1217 aaKnown RBP10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Trpc5Q9QX29 975 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Frmd7A2AD83 703 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Vsig10D3YX43 558 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Lmnb1P14733 588 aaKnown RBP10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Fsd2Q8BZ52 692 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Zbtb43Q9DAI4 467 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Cxcl11Q9JHH5 100 aa10.3□□□□□ -0.76
Trim39-201ENSMUST00000042717 Ambra1A2AH22 1300 aa10.29□□□□□ -0.76
Trim39-201ENSMUST00000042717 Dennd3A2RT67 1274 aa10.29□□□□□ -0.76
Trim39-201ENSMUST00000042717 Gm3893E9Q1I1 302 aa10.29□□□□□ -0.76
Trim39-201ENSMUST00000042717 DaxxO35613 739 aa10.29□□□□□ -0.76
Trim39-201ENSMUST00000042717 ErfeQ6PGN1 340 aa10.29□□□□□ -0.76
Trim39-201ENSMUST00000042717 Trmt44Q9D2Q2 713 aa10.29□□□□□ -0.76
Trim39-201ENSMUST00000042717 Mtmr2Q9Z2D1 643 aa10.29□□□□□ -0.76
Trim39-201ENSMUST00000042717 Bend4P86174 541 aa10.29□□□□□ -0.76
Trim39-201ENSMUST00000042717 HelbQ6NVF4 1074 aa10.29□□□□□ -0.76
Trim39-201ENSMUST00000042717 Tmem179Q8BHH9 233 aa10.29□□□□□ -0.76
Trim39-201ENSMUST00000042717 Lipo1J3QME6 396 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Bnip3O55003 187 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Irx3P81067 507 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Ehmt1Q5DW34 1296 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Large2Q5XPT3 690 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Best3Q6H1V1 669 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Fsd1Q7TPM6 496 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Alx1Q8C8B0 326 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 ParnQ8VDG3 624 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Myh3P13541 1940 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Myh7Q91Z83 1935 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Olfr247E9PVJ7 320 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Spryd3E9Q9B3 442 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Olfr819K7N727 320 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Mum1l1Q4VA55 681 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 B4galnt4Q766D5 1034 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Otop3Q80UF9 577 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Cep55Q8BT07 462 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Atad2Q8CDM1 1040 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Ttc5Q99LG4 440 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Odf2lQ9D478 642 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Rai14Q9EP71 979 aaKnown RBP10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Carmil3Q3UFQ8 1375 aa10.28□□□□□ -0.76
Trim39-201ENSMUST00000042717 Babam1Q3UI43 333 aa10.27□□□□□ -0.76
Trim39-201ENSMUST00000042717 Ankrd13aQ80UP5 588 aa10.27□□□□□ -0.76
Trim39-201ENSMUST00000042717 Tango6Q8C3S2 1079 aa10.27□□□□□ -0.76
Trim39-201ENSMUST00000042717 Stn1Q8K2X3 378 aa10.27□□□□□ -0.76
Trim39-201ENSMUST00000042717 Bloc1s4Q8VED2 215 aa10.27□□□□□ -0.76
Trim39-201ENSMUST00000042717 Hps4Q99KG7 671 aa10.27□□□□□ -0.76
Trim39-201ENSMUST00000042717 Klrk1O54709 232 aa10.27□□□□□ -0.77
Trim39-201ENSMUST00000042717 Gnat2P50149 354 aa10.27□□□□□ -0.77
Trim39-201ENSMUST00000042717 Kif22Q3V300 660 aa10.27□□□□□ -0.77
Trim39-201ENSMUST00000042717 Ddx19aQ61655 478 aaKnown RBP10.27□□□□□ -0.77
Trim39-201ENSMUST00000042717 Krt84Q99M73 603 aa10.27□□□□□ -0.77
Trim39-201ENSMUST00000042717 Adgra3Q7TT36 1310 aa10.27□□□□□ -0.77
Trim39-201ENSMUST00000042717 Znf609Q8BZ47 1413 aa10.27□□□□□ -0.77
Trim39-201ENSMUST00000042717 Ltn1Q6A009 1767 aa10.27□□□□□ -0.77
Trim39-201ENSMUST00000042717 Spata5Q3UMC0 893 aaKnown RBP10.27□□□□□ -0.77
Trim39-201ENSMUST00000042717 1700018B08RikQ9DA83 213 aa10.27□□□□□ -0.77
Trim39-201ENSMUST00000042717 Ptf1aQ9QX98 324 aa10.27□□□□□ -0.77
Trim39-201ENSMUST00000042717 Stat1P42225 749 aa10.26□□□□□ -0.77
Trim39-201ENSMUST00000042717 Ctdnep1Q3TP92 244 aa10.26□□□□□ -0.77
Trim39-201ENSMUST00000042717 Rasa1E9PYG6 1038 aa10.26□□□□□ -0.77
Trim39-201ENSMUST00000042717 Pde11aP0C1Q2 933 aa10.26□□□□□ -0.77
Trim39-201ENSMUST00000042717 Adck5Q80V03 582 aa10.26□□□□□ -0.77
Trim39-201ENSMUST00000042717 DymQ8CHY3 669 aa10.26□□□□□ -0.77
Trim39-201ENSMUST00000042717 Pcdhb5Q91XZ5 792 aa10.26□□□□□ -0.77
Trim39-201ENSMUST00000042717 Mtfr1lQ9CWE0 289 aa10.26□□□□□ -0.77
Trim39-201ENSMUST00000042717 NesQ6P5H2 1864 aaKnown RBP10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 StrcQ8VIM6 1809 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Exosc10P56960 887 aaKnown RBP10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Pald1P70261 859 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Map3k12Q60700 888 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Pramel6Q810Y9 485 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Nup133Q8R0G9 1155 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Taf1dQ9D4V4 322 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 RabggtaQ9JHK4 567 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Epb41l3Q9WV92 929 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Usp17lbE9Q9U0 468 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Zdhhc9P59268 364 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Ppp1r10Q80W00 888 aaKnown RBP10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Plekhg6Q8R0J1 787 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Jag1Q9QXX0 1218 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Me1P06801 572 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 FanccP50652 591 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 XpcP51612 930 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Olfr118Q7TRJ6 321 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Nxf7Q80SZ6 620 aaKnown RBP10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Ncaph2Q8BSP2 607 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 9230110C19RikQ8CC70 267 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 Znrd1-asQ8R0E5 213 aa10.25□□□□□ -0.77
Trim39-201ENSMUST00000042717 SnrkQ8VDU5 748 aa10.25□□□□□ -0.77
Retrieved 100 of 22,080 RNA–protein pairs in 49.7 ms