RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	EGR1	P18146	543 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	COL10A1	Q03692	680 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	CLEC18C	Q8NCF0	446 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	OR10A7	Q8NGE5	316 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	SPTA1	P02549	2419 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	TLN1	Q9Y490	2541 aa	Known RBP	12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	IGHV1-18	A0A0C4DH31	117 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	TNFSF13	O75888	250 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	GCG	P01275	180 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	IGKV3-15	P01624	115 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	GUSBP1	Q15486	140 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	ACSF3	Q4G176	576 aa	Predicted RBP	12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	FAM90A2P	Q658T7	463 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	LCN15	Q6UWW0	184 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	FGFRL1	Q8N441	504 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	OR2Z1	Q8NG97	314 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	PSENEN	Q9NZ42	101 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	GNG13	Q9P2W3	67 aa		12.36	□□□□□ -0.43
DDX55-209	ENST00000542286	C17orf98	A8MV24	154 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	ELL	P55199	621 aa	Predicted RBP	12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	BRWD1-AS2	P59051	145 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	TLE4	Q04727	773 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	INO80C	Q6PI98	192 aa	Predicted RBP	12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	C22orf34	Q6ZV56	151 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	STARD4	Q96DR4	205 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	CBY1	Q9Y3M2	126 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	CUL9	Q8IWT3	2517 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	XKRY2	A2RUG3	117 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	MARCH11	A6NNE9	402 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	SYNGR2	O43760	224 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	S1PR2	O95136	353 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	OPN1MW	P04001	364 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	OPN1MW2	P0DN77	364 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	OPN1MW3	P0DN78	364 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	PNRC1	Q12796	327 aa	Predicted RBP	12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	ZDHHC16	Q969W1	377 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	ATP5S	Q99766	215 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	MBNL3	Q9NUK0	354 aa	Known RBP	12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	CLN8	Q9UBY8	286 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	TPR	P12270	2363 aa	Known RBP	12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	TRAV17	A0A0B4J275	112 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	IGHV2OR16-5	A0A0B4J2B6	119 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	LOC102723971	A0A1B0GUV8	181 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286		M0R143	59 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	TM4SF5	O14894	197 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	OR4A8	P0C604	315 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	RAB4A	P20338	218 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	S100G	P29377	79 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	NUBP1	P53384	320 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	ACP7	Q6ZNF0	438 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	CBLN4	Q9NTU7	201 aa		12.35	□□□□□ -0.43
DDX55-209	ENST00000542286	HBE1	P02100	147 aa		12.34	□□□□□ -0.43
DDX55-209	ENST00000542286	MMP9	P14780	707 aa		12.34	□□□□□ -0.43
DDX55-209	ENST00000542286	CD177	Q8N6Q3	437 aa		12.34	□□□□□ -0.43
DDX55-209	ENST00000542286	LRRC29	Q8WV35	223 aa		12.34	□□□□□ -0.43
DDX55-209	ENST00000542286	LEAP2	Q969E1	77 aa		12.34	□□□□□ -0.43
DDX55-209	ENST00000542286	GNPNAT1	Q96EK6	184 aa	Predicted RBP	12.34	□□□□□ -0.43
DDX55-209	ENST00000542286	GAB2	Q9UQC2	676 aa		12.34	□□□□□ -0.43
DDX55-209	ENST00000542286	GALR2	O43603	387 aa	Predicted RBP	12.34	□□□□□ -0.43
DDX55-209	ENST00000542286	COL8A2	P25067	703 aa		12.34	□□□□□ -0.43
DDX55-209	ENST00000542286	PAX5	Q02548	391 aa		12.34	□□□□□ -0.43
DDX55-209	ENST00000542286	OR10G4	Q8NGN3	311 aa		12.34	□□□□□ -0.43
DDX55-209	ENST00000542286	SRD5A3	Q9H8P0	318 aa		12.34	□□□□□ -0.43
DDX55-209	ENST00000542286	RPRM	Q9NS64	109 aa		12.34	□□□□□ -0.43
DDX55-209	ENST00000542286	CSMD1	Q96PZ7	3565 aa		12.34	□□□□□ -0.43
DDX55-209	ENST00000542286	SVEP1	Q4LDE5	3571 aa		12.33	□□□□□ -0.43
DDX55-209	ENST00000542286	ZFP92	A6NM28	416 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	LINC00473	A8K010	186 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	CLDN1	O95832	211 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	COX5A	P20674	150 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	DUX4L9	Q6RFH8	374 aa	Predicted RBP	12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	GALM	Q96C23	342 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	SDF2L1	Q9HCN8	221 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	PSG11	Q9UQ72	335 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	WIPI2	Q9Y4P8	454 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	UBE2L5P	A0A1B0GUS4	154 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	TMEM30CP	A0ZSE6	113 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	PRR33	A8MZF0	331 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286		M0R1B8	84 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	MDH2	P40926	338 aa	Known RBP	12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	PCP4	P48539	62 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	TDGF1P3	P51864	188 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	P2RY6	Q15077	328 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	ZNF726P1	Q15940	193 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	WDR25	Q64LD2	544 aa	Predicted RBP	12.33	□□□□□ -0.44
DDX55-209	ENST00000542286		Q8IYB0	196 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	ZNRF1	Q8ND25	227 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	ZNF665	Q9H7R5	613 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	KCNIP1	Q9NZI2	227 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	PTPRB	P23467	1997 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	DSCAM	O60469	2012 aa		12.33	□□□□□ -0.44
DDX55-209	ENST00000542286	DCHS2	Q6V1P9	2916 aa		12.32	□□□□□ -0.44
DDX55-209	ENST00000542286	AQP7	O14520	342 aa		12.32	□□□□□ -0.44
DDX55-209	ENST00000542286	TEX38	Q6PEX7	206 aa		12.32	□□□□□ -0.44
DDX55-209	ENST00000542286	TGIF2LY	Q8IUE0	185 aa		12.32	□□□□□ -0.44
DDX55-209	ENST00000542286	VKORC1L1	Q8N0U8	176 aa		12.32	□□□□□ -0.44
DDX55-209	ENST00000542286	SARAF	Q96BY9	339 aa		12.32	□□□□□ -0.44
DDX55-209	ENST00000542286	R3HDM4	Q96D70	268 aa		12.32	□□□□□ -0.44
DDX55-209	ENST00000542286	HES4	Q9HCC6	221 aa		12.32	□□□□□ -0.44
DDX55-209	ENST00000542286	ZNF71	Q9NQZ8	489 aa	Predicted RBP	12.32	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms