RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 MEOX1P50221 254 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 RPL39P5Q59GN2 51 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 MOB3BQ86TA1 216 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 CDH20Q9HBT6 801 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 DOPEY2Q9Y3R5 2298 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 ETV2O00321 342 aaPredicted RBP7.28□□□□□ -1.24
USP40-203ENST00000427112 NEURL1O76050 574 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 COX5BP10606 129 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 CD81P60033 236 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 UBE2NP61088 152 aaKnown RBP7.28□□□□□ -1.24
USP40-203ENST00000427112 GNG3P63215 75 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 RPL24P83731 157 aaKnown RBP7.28□□□□□ -1.24
USP40-203ENST00000427112 TMEM241Q24JQ0 296 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 ZNF506Q5JVG8 444 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 TMEM42Q69YG0 159 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 Q6ZR03 302 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 ZCCHC24Q8N2G6 241 aaKnown RBP7.28□□□□□ -1.24
USP40-203ENST00000427112 TAF15Q92804 592 aaKnown RBP eCLIP7.28□□□□□ -1.24
USP40-203ENST00000427112 TMEM18Q96B42 140 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 TMEM56Q96MV1 263 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 TRIB1Q96RU8 372 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 HEYLQ9NQ87 328 aaPredicted RBP7.28□□□□□ -1.24
USP40-203ENST00000427112 BOKQ9UMX3 212 aaPredicted RBP7.28□□□□□ -1.24
USP40-203ENST00000427112 TMEM56-RWDD3S4R434 201 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 ODAMA1E959 279 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 C10orf142B7Z368 130 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 TOX4O94842 621 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 FGF5P12034 268 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 RAC2P15153 192 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 FOXO1Q12778 655 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 IL24Q13007 206 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 C1orf185Q5T7R7 199 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 MIC13Q5XKP0 118 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 PMS2CLQ68D20 193 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 MS4A10Q96PG2 267 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 C1QTNF5Q9BXJ0 243 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 HIPK2Q9H2X6 1198 aa7.28□□□□□ -1.24
USP40-203ENST00000427112 EREGO14944 169 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 AMBPP02760 352 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 BPIFB3P59826 476 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 TRA2AQ13595 282 aaKnown RBP eCLIP7.27□□□□□ -1.25
USP40-203ENST00000427112 IL11RAQ14626 422 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 TDRG1Q3Y452 100 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 H2BFWTQ7Z2G1 175 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 ZNRF1Q8ND25 227 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 PARD6GQ9BYG4 376 aaPredicted RBP7.27□□□□□ -1.25
USP40-203ENST00000427112 TMEM9BQ9NQ34 198 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 C12orf77C9JDV5 145 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 H0Y980 276 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 TIMM8AO60220 97 aaPredicted RBP7.27□□□□□ -1.25
USP40-203ENST00000427112 GYPAP02724 150 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 CD82P27701 267 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 LHX2P50458 406 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 HBG1P69891 147 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 HBG2P69892 147 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 FXYD3Q14802 87 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 SPATA31B1PQ5VZV4 182 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 ATOH7Q8N100 152 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 OR10A7Q8NGE5 316 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 OR5A2Q8NGI9 324 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 POM121L2Q96KW2 1035 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 QTRT1Q9BXR0 403 aaKnown RBP7.27□□□□□ -1.25
USP40-203ENST00000427112 SDF2L1Q9HCN8 221 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 DECR2Q9NUI1 292 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 NCOR2Q9Y618 2525 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 A0A1W2PPV4 95 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 LINC00473A8K010 186 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 C11orf94C9JXX5 98 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 IGHEP01854 428 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 HBZP02008 142 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 CBLN1P23435 193 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 LMO1P25800 156 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 PSMB3P49720 205 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 HINT1P49773 126 aaPredicted RBP7.27□□□□□ -1.25
USP40-203ENST00000427112 RPL23P62829 140 aaKnown RBP7.27□□□□□ -1.25
USP40-203ENST00000427112 MEF2BQ02080 365 aaPredicted RBP7.27□□□□□ -1.25
USP40-203ENST00000427112 TNFRSF9Q07011 255 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 ZFP36L1Q07352 338 aaKnown RBP7.27□□□□□ -1.25
USP40-203ENST00000427112 MLANAQ16655 118 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 SPRNQ5BIV9 151 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 DUX4L9Q6RFH8 374 aaPredicted RBP7.27□□□□□ -1.25
USP40-203ENST00000427112 DPPA3Q6W0C5 159 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 ZNF664Q8N3J9 261 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 M1APQ8TC57 530 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 SNRNP40Q96DI7 357 aaKnown RBP7.27□□□□□ -1.25
USP40-203ENST00000427112 SEMA5BQ9P283 1151 aa7.27□□□□□ -1.25
USP40-203ENST00000427112 NOTCH3Q9UM47 2321 aa7.26□□□□□ -1.25
USP40-203ENST00000427112 IGHV3-21A0A0B4J1V1 117 aa7.26□□□□□ -1.25
USP40-203ENST00000427112 A0A1B0GU03 582 aa7.26□□□□□ -1.25
USP40-203ENST00000427112 F2Z2F3 143 aa7.26□□□□□ -1.25
USP40-203ENST00000427112 CLDN14O95500 239 aa7.26□□□□□ -1.25
USP40-203ENST00000427112 IL18BPO95998 194 aa7.26□□□□□ -1.25
USP40-203ENST00000427112 HBE1P02100 147 aa7.26□□□□□ -1.25
USP40-203ENST00000427112 OR10J4P0C629 311 aa7.26□□□□□ -1.25
USP40-203ENST00000427112 CLDN18P56856 261 aa7.26□□□□□ -1.25
USP40-203ENST00000427112 PPP1CBP62140 327 aa7.26□□□□□ -1.25
USP40-203ENST00000427112 SRPXP78539 464 aa7.26□□□□□ -1.25
USP40-203ENST00000427112 CLEC2AQ6UVW9 174 aa7.26□□□□□ -1.25
USP40-203ENST00000427112 ZNF573Q86YE8 665 aa7.26□□□□□ -1.25
USP40-203ENST00000427112 LRTM2Q8N967 370 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms