RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 PLNP26678 52 aa3.46□□□□□ -1.85
USH2A-201ENST00000307340 ZIC4Q8N9L1 334 aa3.46□□□□□ -1.85
USH2A-201ENST00000307340 TMEM54Q969K7 222 aa3.46□□□□□ -1.85
USH2A-201ENST00000307340 PRDM13Q9H4Q3 707 aa3.46□□□□□ -1.85
USH2A-201ENST00000307340 LIPGQ9Y5X9 500 aa3.46□□□□□ -1.85
USH2A-201ENST00000307340 SYNGR3O43761 229 aa3.46□□□□□ -1.85
USH2A-201ENST00000307340 SMAD2Q15796 467 aaKnown RBP3.46□□□□□ -1.85
USH2A-201ENST00000307340 TMEM144Q7Z5S9 345 aa3.46□□□□□ -1.85
USH2A-201ENST00000307340 FLRT3Q9NZU0 649 aa3.46□□□□□ -1.85
USH2A-201ENST00000307340 MFAP4P55083 255 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 MGAT2Q10469 447 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 COL9A3Q14050 684 aaPredicted RBP3.46□□□□□ -1.86
USH2A-201ENST00000307340 LYPD8Q6UX82 237 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 SCGB1D4Q6XE38 83 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 OR8I2Q8N0Y5 310 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 MED20Q9H944 212 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 PCNX1Q96RV3 2341 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 LYL1P12980 280 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 CTLA4P16410 223 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 ZNF32P17041 273 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 ORMDL3Q8N138 153 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 POC1AQ8NBT0 407 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 ADAD2Q8NCV1 583 aaKnown RBP3.46□□□□□ -1.86
USH2A-201ENST00000307340 OR4P4Q8NGL7 312 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 RARRES2Q99969 163 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 ZNF430Q9H8G1 570 aaPredicted RBP3.46□□□□□ -1.86
USH2A-201ENST00000307340 GPR27Q9NS67 375 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 A0A1W2PPV9 198 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 UBE2CO00762 179 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 FSTL3O95633 263 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 ARG1P05089 322 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 AMER3Q8N944 861 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 C8orf31Q8N9H6 132 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 C1QTNF4Q9BXJ3 329 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 PILRAQ9UKJ1 303 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.46□□□□□ -1.86
USH2A-201ENST00000307340 KBTBD11-OT1A0A1B0GTJ5 212 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 GBGT1Q8N5D6 347 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 DMRTA2Q96SC8 542 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 OSTCQ9NRP0 149 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 CACNA1BQ00975 2339 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 TMEM8BA6NDV4 472 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 EFNB1P98172 346 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 MRPL37Q9BZE1 423 aaKnown RBP3.46□□□□□ -1.86
USH2A-201ENST00000307340 ZNF256Q9Y2P7 627 aaPredicted RBP3.46□□□□□ -1.86
USH2A-201ENST00000307340 A0A1B0GUT8 65 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 OR1D5P58170 312 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 HES1Q14469 280 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 RHOVQ96L33 236 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 CHTOPQ9Y3Y2 248 aaKnown RBP3.46□□□□□ -1.86
USH2A-201ENST00000307340 COL6A6A6NMZ7 2263 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 CA2P00918 260 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 PPOXP50336 477 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 CLDN12P56749 244 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 FBLN7Q53RD9 439 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 SLC25A34Q6PIV7 304 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 RFLNAQ6ZTI6 216 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 TMEM99Q8N816 258 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 CYB561D1Q8N8Q1 229 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 REPIN1Q9BWE0 567 aaKnown RBP3.46□□□□□ -1.86
USH2A-201ENST00000307340 CD3EP07766 207 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 SP9P0CG40 484 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 DYNLT3P51808 116 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 CLDN2P57739 230 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 ZNF260Q3ZCT1 412 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 ZNF385BQ569K4 471 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 IER5LQ5T953 404 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 DNAJC30Q96LL9 226 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 ZMAT3Q9HA38 289 aaKnown RBP3.46□□□□□ -1.86
USH2A-201ENST00000307340 JKAMPQ9P055 326 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 J3QRE1 110 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 ENSAO43768 121 aaKnown RBP3.46□□□□□ -1.86
USH2A-201ENST00000307340 FCGR3AP08637 254 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 SHISA6Q6ZSJ9 500 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 VN1R4Q7Z5H5 301 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 OR4C12Q96R67 309 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 MRPL13Q9BYD1 178 aaKnown RBP3.46□□□□□ -1.86
USH2A-201ENST00000307340 RAMP1O60894 148 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 SRSF9Q13242 221 aaKnown RBP eCLIP3.46□□□□□ -1.86
USH2A-201ENST00000307340 SLC25A47Q6Q0C1 308 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 TMEM179BQ7Z7N9 219 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 C10orf111Q8N326 155 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 GRPP07492 148 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 TMEM136Q6ZRR5 245 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 NECAP1Q8NC96 275 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 SEMA5BQ9P283 1151 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 IGHV1OR15-9A0A0B4J2B8 117 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 C7orf77A4D0Y5 90 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 USMG5Q96IX5 58 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 TMPRSS2O15393 492 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 BGLAPP02818 100 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 IL11P20809 199 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 FAM106AQ4KMX7 169 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 OR9G1Q8NH87 305 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 GUCD1Q96NT3 240 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 CACNG4Q9UBN1 327 aa3.46□□□□□ -1.86
USH2A-201ENST00000307340 ZIC2O95409 532 aaPredicted RBP3.45□□□□□ -1.86
USH2A-201ENST00000307340 EGR4Q05215 589 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 NUDT11Q96G61 164 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 C20orf141Q9NUB4 165 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms