RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CD300LFQ8TDQ1 290 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 TIMD4Q96H15 378 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 ZNRD1Q9P1U0 126 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 GAB2Q9UQC2 676 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 DOCK11Q5JSL3 2073 aa10.99□□□□□ -0.65
HMGB1-202ENST00000339872 TAAR5O14804 337 aa10.99□□□□□ -0.65
HMGB1-202ENST00000339872 CHST1O43916 411 aa10.99□□□□□ -0.65
HMGB1-202ENST00000339872 TMEM155Q4W5P6 130 aa10.99□□□□□ -0.65
HMGB1-202ENST00000339872 GPR157Q5UAW9 335 aa10.99□□□□□ -0.65
HMGB1-202ENST00000339872 RAB1CQ92928 201 aa10.99□□□□□ -0.65
HMGB1-202ENST00000339872 PHYHIPLQ96FC7 376 aa10.99□□□□□ -0.65
HMGB1-202ENST00000339872 PRELID3BQ9Y3B1 194 aa10.99□□□□□ -0.65
HMGB1-202ENST00000339872 TRBV23-1A0A0A0MS06 115 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 FAM24AA6NFZ4 105 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 RPL7L1Q6DKI1 246 aaKnown RBP10.98□□□□□ -0.65
HMGB1-202ENST00000339872 ZNF841Q6ZN19 808 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 BAP18Q8IXM2 172 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 BSCL2Q96G97 398 aaPredicted RBP10.98□□□□□ -0.65
HMGB1-202ENST00000339872 S1PR3Q99500 378 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 ZNF251Q9BRH9 671 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 LYRM2Q9NU23 88 aaPredicted RBP10.98□□□□□ -0.65
HMGB1-202ENST00000339872 DCHS2Q6V1P9 2916 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 MARCH11A6NNE9 402 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 KIAA1324LA8MWY0 1029 aaPredicted RBP10.98□□□□□ -0.65
HMGB1-202ENST00000339872 TMEM50AO95807 157 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 P0C879 139 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 DLX6P56179 175 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 EWSR1Q01844 656 aaKnown RBP eCLIP10.98□□□□□ -0.65
HMGB1-202ENST00000339872 NHLH2Q02577 135 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 H2BFWTQ7Z2G1 175 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 ZNF843Q8N446 348 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 OR8B3Q8NGG8 313 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 R3HDM4Q96D70 268 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 RAB39BQ96DA2 213 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 OR8B2Q96RD0 313 aa10.98□□□□□ -0.65
HMGB1-202ENST00000339872 IGSF23A1L1A6 192 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 HPRT1P00492 218 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 NMBP08949 121 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 RNF224P0DH78 156 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 MMP9P14780 707 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 DDB2Q92466 427 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 NEIL1Q96FI4 390 aaPredicted RBP10.97□□□□□ -0.65
HMGB1-202ENST00000339872 CHODLQ9H9P2 273 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 COA4Q9NYJ1 87 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 MIOXQ9UGB7 285 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 LINC00862A6NCI5 91 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 SYNGR2O43760 224 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 NDUFS7O75251 213 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 KIR2DS2P43631 304 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 THBS3P49746 956 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 CITED4Q96RK1 184 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 NARFLQ9H6Q4 476 aa10.97□□□□□ -0.65
HMGB1-202ENST00000339872 H3BP45 60 aa10.96□□□□□ -0.65
HMGB1-202ENST00000339872 TOR1AO14656 332 aa10.96□□□□□ -0.65
HMGB1-202ENST00000339872 RBFOX2O43251 390 aaKnown RBP eCLIP10.96□□□□□ -0.65
HMGB1-202ENST00000339872 IAPPP10997 89 aa10.96□□□□□ -0.65
HMGB1-202ENST00000339872 PAX9P55771 341 aa10.96□□□□□ -0.65
HMGB1-202ENST00000339872 MIDNQ504T8 468 aa10.96□□□□□ -0.65
HMGB1-202ENST00000339872 SSX9Q7RTT3 188 aa10.96□□□□□ -0.65
HMGB1-202ENST00000339872 TMEM252Q8N6L7 170 aa10.96□□□□□ -0.65
HMGB1-202ENST00000339872 OR4S2Q8NH73 311 aa10.96□□□□□ -0.65
HMGB1-202ENST00000339872 RAB40CQ96S21 281 aa10.96□□□□□ -0.65
HMGB1-202ENST00000339872 SLC25A31Q9H0C2 315 aa10.96□□□□□ -0.65
HMGB1-202ENST00000339872 GPR37O15354 613 aa10.96□□□□□ -0.66
HMGB1-202ENST00000339872 RBMXL2O75526 392 aaKnown RBP10.96□□□□□ -0.66
HMGB1-202ENST00000339872 JTBO76095 146 aa10.96□□□□□ -0.66
HMGB1-202ENST00000339872 IGHV1-8P0DP01 117 aa10.96□□□□□ -0.66
HMGB1-202ENST00000339872 S100A1P23297 94 aa10.96□□□□□ -0.66
HMGB1-202ENST00000339872 RPL23AP62750 156 aaKnown RBP10.96□□□□□ -0.66
HMGB1-202ENST00000339872 EIF5AP63241 154 aaKnown RBP10.96□□□□□ -0.66
HMGB1-202ENST00000339872 WDR25Q64LD2 544 aaPredicted RBP10.96□□□□□ -0.66
HMGB1-202ENST00000339872 ZNF295-AS1Q8N0V1 137 aa10.96□□□□□ -0.66
HMGB1-202ENST00000339872 ZNF383Q8NA42 475 aa10.96□□□□□ -0.66
HMGB1-202ENST00000339872 TMED6Q8WW62 240 aa10.96□□□□□ -0.66
HMGB1-202ENST00000339872 ADTRPQ96IZ2 230 aa10.96□□□□□ -0.66
HMGB1-202ENST00000339872 CXorf58Q96LI9 332 aa10.96□□□□□ -0.66
HMGB1-202ENST00000339872 SLC25A32Q9H2D1 315 aa10.96□□□□□ -0.66
HMGB1-202ENST00000339872 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.96□□□□□ -0.66
HMGB1-202ENST00000339872 FAM90A26D6RGX4 464 aa10.95□□□□□ -0.66
HMGB1-202ENST00000339872 C1QL1O75973 258 aa10.95□□□□□ -0.66
HMGB1-202ENST00000339872 CRYZL1O95825 349 aa10.95□□□□□ -0.66
HMGB1-202ENST00000339872 GAPDHP04406 335 aaKnown RBP10.95□□□□□ -0.66
HMGB1-202ENST00000339872 TNFRSF9Q07011 255 aa10.95□□□□□ -0.66
HMGB1-202ENST00000339872 PDZD9Q8IXQ8 264 aa10.95□□□□□ -0.66
HMGB1-202ENST00000339872 VKORC1L1Q8N0U8 176 aa10.95□□□□□ -0.66
HMGB1-202ENST00000339872 CST7O76096 145 aa10.95□□□□□ -0.66
HMGB1-202ENST00000339872 ERVK-16P61578 105 aa10.95□□□□□ -0.66
HMGB1-202ENST00000339872 COMMD7Q86VX2 200 aa10.95□□□□□ -0.66
HMGB1-202ENST00000339872 OR10X1Q8NGY0 326 aa10.95□□□□□ -0.66
HMGB1-202ENST00000339872 WFDC1Q9HC57 220 aa10.95□□□□□ -0.66
HMGB1-202ENST00000339872 HSPB7Q9UBY9 170 aa10.95□□□□□ -0.66
HMGB1-202ENST00000339872 WSB1Q9Y6I7 421 aa10.95□□□□□ -0.66
HMGB1-202ENST00000339872 ZFYVE26Q68DK2 2539 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 BORCS7-ASMTA0A0B4J1R7 106 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 PPIAL4CA0A0B4J2A2 164 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 A0A1W2PPH5 198 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 J3QR06 171 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 F12P00748 615 aaPredicted RBP10.94□□□□□ -0.66
HMGB1-202ENST00000339872 PPIAL4GP0DN37 164 aa10.94□□□□□ -0.66
HMGB1-202ENST00000339872 NQO2P16083 231 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms