RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 TMEM78Q5T7P6 136 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 OR1L6Q8NGR2 347 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 NUDT16L1Q9BRJ7 211 aaKnown RBP13.45□□□□□ -0.26
PTPRF-201ENST00000359947 TOLLIPQ9H0E2 274 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 P2RY1P47900 373 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 LAMTOR1Q6IAA8 161 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 ADAM11O75078 769 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 HYPMO75409 117 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 PTX4Q96A99 478 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 PITPNC1Q9UKF7 332 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 RGPD3A6NKT7 1758 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-201ENST00000359947 CELA3AP09093 270 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 SCAND1P57086 179 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 A0A1W2PP11 408 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 C5orf52A6NGY3 159 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 RNASE1P07998 156 aaKnown RBP13.44□□□□□ -0.26
PTPRF-201ENST00000359947 OR10C1Q96KK4 312 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 C17orf51A8MQB3 221 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 CLDN34H7C241 214 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 ATP5G2Q06055 141 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 TMEM105Q8N8V8 129 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 OR10G8Q8NGN5 311 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 SPTBN2O15020 2390 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 IGHV3OR16-13A0A075B7E8 117 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 IGHV3-74A0A0B4J1X5 117 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 SLC35E3Q7Z769 313 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 DIDO1Q9BTC0 2240 aaKnown RBP13.44□□□□□ -0.26
PTPRF-201ENST00000359947 A0A1W2PS18 150 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 ZIC3O60481 467 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 HPRT1P00492 218 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 CCKARP32238 428 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 VKORC1L1Q8N0U8 176 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 CCL27Q9Y4X3 112 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 FAM106AQ4KMX7 169 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 TIMP4Q99727 224 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 LMX1BO60663 402 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 NANOS3P60323 173 aaKnown RBP13.44□□□□□ -0.26
PTPRF-201ENST00000359947 SEC11CQ9BY50 192 aa13.44□□□□□ -0.26
PTPRF-201ENST00000359947 ASAH2BP0C7U1 165 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 C1orf174Q8IYL3 243 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 SYNGR3O43761 229 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 SSTR5P35346 364 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 EWSR1Q01844 656 aaKnown RBP eCLIP13.43□□□□□ -0.266e-7■■■■□ 25.8
PTPRF-201ENST00000359947 MYOZ3Q8TDC0 251 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 FCGR3AP08637 254 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 PCSK4Q6UW60 755 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 DLX1P56177 255 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 IDI2-AS1Q9NZ38 188 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 IGHV3-66A0A0C4DH42 116 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 DEDDO75618 318 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 HERVK_113P61574 105 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 C19orf54Q5BKX5 351 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 RFPL3SP0C7P2 107 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 VSIG10L2P0DP72 767 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 OR52M1Q8NGK5 317 aa13.43□□□□□ -0.26
PTPRF-201ENST00000359947 WNT9BO14905 357 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 CXorf1O96002 111 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 MC5RP33032 325 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 FGF12P61328 243 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 PRB3Q04118 309 aaPredicted RBP13.42□□□□□ -0.26
PTPRF-201ENST00000359947 OR10D4PQ8NGN7 298 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 RAB33BQ9H082 229 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 TGFAP01135 160 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 ZP4Q12836 540 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 HIST3H3Q16695 136 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 IQCJQ1A5X6 159 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 CXorf66Q5JRM2 361 aaPredicted RBP13.42□□□□□ -0.26
PTPRF-201ENST00000359947 CALYQ9NYX4 217 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 PLXNA1Q9UIW2 1896 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 OR4C46A6NHA9 309 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 RPL8P62917 257 aaKnown RBP13.42□□□□□ -0.26
PTPRF-201ENST00000359947 POM121Q96HA1 1249 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 IL36RNQ9UBH0 155 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 S4R3C0 116 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 M0R3E3 92 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 DXOO77932 396 aaKnown RBP13.42□□□□□ -0.26
PTPRF-201ENST00000359947 SRSF9Q13242 221 aaKnown RBP eCLIP13.42□□□□□ -0.26
PTPRF-201ENST00000359947 ZBTB34Q8NCN2 500 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 ADIPOR1Q96A54 375 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 KLK13Q9UKR3 277 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 TMEM56-RWDD3S4R434 201 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 IGHV3-49A0A0A0MS15 119 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 DUXBA0A1W2PPF3 345 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 CA11O75493 328 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 CLDN18P56856 261 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 LRP11Q86VZ4 500 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 FAM168AQ92567 244 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 RGS13O14921 159 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 BTF3P20290 206 aaKnown RBP13.42□□□□□ -0.26
PTPRF-201ENST00000359947 GCSHP23434 173 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 MMP16P51512 607 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 CALHM1Q8IU99 346 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 MARS2Q96GW9 593 aaKnown RBP13.42□□□□□ -0.26
PTPRF-201ENST00000359947 MIEN1Q9BRT3 115 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 NAT8Q9UHE5 227 aa13.42□□□□□ -0.26
PTPRF-201ENST00000359947 PDCD11Q14690 1871 aaKnown RBP13.41□□□□□ -0.26
PTPRF-201ENST00000359947 BSXQ3C1V8 233 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 PEAR1Q5VY43 1037 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-201ENST00000359947 PPP1R32Q7Z5V6 425 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 ZNF645Q8N7E2 425 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms