RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 HLA-DRB5Q30154 266 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 TMEM30BQ3MIR4 351 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 LDLRAD2Q5SZI1 272 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 STEAP3Q658P3 488 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 ZNF626Q68DY1 528 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 FAAP20Q6NZ36 180 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 BCL6BQ8N143 479 aaPredicted RBP11.15□□□□□ -0.62
CD44-224ENST00000526669 PIP4P2Q8N4L2 257 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 OR4P4Q8NGL7 312 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 OR9G1Q8NH87 305 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 TRIM63Q969Q1 353 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 YPEL2Q96QA6 119 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 ABHD14AQ9BUJ0 271 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 BEX2Q9BXY8 128 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 TINAGL1Q9GZM7 467 aaPredicted RBP11.15□□□□□ -0.62
CD44-224ENST00000526669 NECAP2Q9NVZ3 263 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 TMEM160Q9NX00 188 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 NUP50Q9UKX7 468 aa11.15□□□□□ -0.62
CD44-224ENST00000526669 RBMX2Q9Y388 322 aaKnown RBP11.15□□□□□ -0.62
CD44-224ENST00000526669 LINC00854A0A1B0GVQ3 168 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 MDFIC2A0A1B0GVS7 189 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 ZNF736B4DX44 427 aaPredicted RBP11.14□□□□□ -0.63
CD44-224ENST00000526669 OR5H8P0DN80 308 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 EPHA1P21709 976 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 PRRX1P54821 245 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 LGALS4P56470 323 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 TAS2R19P59542 299 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 ZNF846Q147U1 533 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 PLA1AQ53H76 456 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 CT45A1Q5HYN5 189 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 TRIQKQ629K1 86 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 ZNF57Q68EA5 555 aaPredicted RBP11.14□□□□□ -0.63
CD44-224ENST00000526669 LINC00299Q6ZSB3 139 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 H1FOOQ8IZA3 346 aaPredicted RBP11.14□□□□□ -0.63
CD44-224ENST00000526669 GDPD1Q8N9F7 314 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 TMEM229BQ8NBD8 167 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 OR2AK2Q8NG84 335 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 OR11H6Q8NGC7 330 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 OR4D10Q8NGI6 311 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 OR10X1Q8NGY0 326 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 CT45A3Q8NHU0 189 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 CREB3L1Q96BA8 519 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 ABHD14BQ96IU4 210 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 MS4A7Q9GZW8 240 aaPredicted RBP11.14□□□□□ -0.63
CD44-224ENST00000526669 C11orf54Q9H0W9 315 aaPredicted RBP11.14□□□□□ -0.63
CD44-224ENST00000526669 MMP28Q9H239 520 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 RNF150Q9ULK6 438 aa11.14□□□□□ -0.63
CD44-224ENST00000526669 A0A0U1RQK1 487 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 ANKRD20A5PA0PJZ0 165 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 RAB3DO95716 219 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 IGLV1-47P01700 117 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 CSF1P09603 554 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 CTXN2P0C2S0 81 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 AADACP22760 399 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 FCGR2CP31995 323 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 INPP1P49441 399 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 FXYD4P59646 89 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 SSBP1Q04837 148 aaKnown RBP11.13□□□□□ -0.63
CD44-224ENST00000526669 LSAMPQ13449 338 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 DIAPH2-AS1Q14236 149 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 RNASE10Q5GAN6 216 aaKnown RBP11.13□□□□□ -0.63
CD44-224ENST00000526669 STEAP1BQ6NZ63 245 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 SLC25A48Q6ZT89 311 aaKnown RBP11.13□□□□□ -0.63
CD44-224ENST00000526669 LDLRAD3Q86YD5 345 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 LYG1Q8N1E2 194 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 OR4C16Q8NGL9 310 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 ZNF596Q8TC21 504 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 WDR12Q9GZL7 423 aaKnown RBP11.13□□□□□ -0.63
CD44-224ENST00000526669 RBM7Q9Y580 266 aaKnown RBP11.13□□□□□ -0.63
CD44-224ENST00000526669 HILPDAQ9Y5L2 63 aa11.13□□□□□ -0.63
CD44-224ENST00000526669 IGKV1D-13A0A0B4J2D9 117 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 OR8U9P0C7N5 309 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 AKAIN1P0CW23 69 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 IGKV1-13P0DP09 117 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 SRD5A1P18405 259 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 CD40LGP29965 261 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 TSPAN5P62079 268 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 DYRK1AQ13627 763 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 KLF9Q13886 244 aaPredicted RBP11.12□□□□□ -0.63
CD44-224ENST00000526669 ACTBL2Q562R1 376 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 OVCH2Q7RTZ1 564 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 DYNAPQ8N1N2 210 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 TOMM5Q8N4H5 51 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 LINC00311Q8N616 119 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 BEND2Q8NDZ0 799 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 OR8U1Q8NH10 309 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 OR56B4Q8NH76 319 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 EDARADDQ8WWZ3 215 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 SLC6A7Q99884 636 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 ZNF2Q9BSG1 426 aaPredicted RBP11.12□□□□□ -0.63
CD44-224ENST00000526669 ABCB10Q9NRK6 738 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 CDC42EP3Q9UKI2 254 aa11.12□□□□□ -0.63
CD44-224ENST00000526669 AMMECR1Q9Y4X0 333 aaPredicted RBP11.12□□□□□ -0.63
CD44-224ENST00000526669 PLXNB1O43157 2135 aa11.11□□□□□ -0.63
CD44-224ENST00000526669 BUB1B-PAK6H3BSN5 160 aa11.11□□□□□ -0.63
CD44-224ENST00000526669 DIRAS3O95661 229 aa11.11□□□□□ -0.63
CD44-224ENST00000526669 CD74P04233 296 aa11.11□□□□□ -0.63
CD44-224ENST00000526669 AMY2AP04746 511 aa11.11□□□□□ -0.63
CD44-224ENST00000526669 IFNA6P05013 189 aa11.11□□□□□ -0.63
CD44-224ENST00000526669 IL7P13232 177 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms