RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.43■□□□□ 0.06
SHKBP1-201ENST00000291842 COLCA2A8K830 154 aa15.43■□□□□ 0.06
SHKBP1-201ENST00000291842 METTL15P1P0C7V9 234 aa15.43■□□□□ 0.06
SHKBP1-201ENST00000291842 GABRA2P47869 451 aa15.43■□□□□ 0.06
SHKBP1-201ENST00000291842 HAGHQ16775 308 aa15.43■□□□□ 0.06
SHKBP1-201ENST00000291842 SLC25A24Q6NUK1 477 aa15.43■□□□□ 0.06
SHKBP1-201ENST00000291842 FIP1L1Q6UN15 594 aaKnown RBP15.43■□□□□ 0.06
SHKBP1-201ENST00000291842 WDR82Q6UXN9 313 aa15.43■□□□□ 0.06
SHKBP1-201ENST00000291842 ISOC2Q96AB3 205 aa15.43■□□□□ 0.06
SHKBP1-201ENST00000291842 OR2D2Q9H210 308 aa15.43■□□□□ 0.06
SHKBP1-201ENST00000291842 KCNJ16Q9NPI9 418 aa15.43■□□□□ 0.06
SHKBP1-201ENST00000291842 DKK4Q9UBT3 224 aa15.43■□□□□ 0.06
SHKBP1-201ENST00000291842 TMEM30CPA0ZSE6 113 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 C7orf77A4D0Y5 90 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 SYNGR2O43760 224 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 RAMP3O60896 148 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 IL2RGP31785 369 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 SULT1A1P50225 295 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 CEBPGP53567 150 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 ACP7Q6ZNF0 438 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 GALMQ96C23 342 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 SLC35B3Q9H1N7 401 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 CXXC4Q9H2H0 198 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 SMCO4Q9NRQ5 59 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 LIN7CQ9NUP9 197 aaKnown RBP15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 TNFSF13O75888 250 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 ARL16Q0P5N6 197 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 SFT2D1Q8WV19 159 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 GNPNAT1Q96EK6 184 aaPredicted RBP15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 C5orf30Q96GV9 206 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 COQ2Q96H96 371 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 RAB40CQ96S21 281 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 RSG1Q9BU20 258 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 PSENENQ9NZ42 101 aa15.42■□□□□ 0.06
SHKBP1-201ENST00000291842 IGHV1-18A0A0C4DH31 117 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 HBZP02008 142 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 SLC25A6P12236 298 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 GLIPR1P48060 266 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 AKR1C8PQ5T2L2 129 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 BTNL3Q6UXE8 466 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 FGFRL1Q8N441 504 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 RFESDQ8TAC1 157 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 LSM10Q969L4 123 aaKnown RBP15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 STARD4Q96DR4 205 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 PLSCR4Q9NRQ2 329 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 CACNA1GO43497 2377 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 IGHV3-43A0A0B4J1X8 118 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 IGHV2OR16-5A0A0B4J2B6 119 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 RBFOX3A6NFN3 312 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 FBP1P09467 338 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 IGHV3-43DP0DP04 118 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 LINC00205P59089 165 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 RPL30P62888 115 aaKnown RBP15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 ZNF816Q0VGE8 651 aaPredicted RBP15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 AVPI1Q5T686 147 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 LFNGQ8NES3 379 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 USF3Q68DE3 2245 aa15.41■□□□□ 0.06
SHKBP1-201ENST00000291842 HOXB1P14653 301 aaPredicted RBP15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 GCH1P30793 250 aa15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 SSTR5P35346 364 aa15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 COL10A1Q03692 680 aa15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 SEM1Q6ZVN7 128 aa15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 DCTN5Q9BTE1 182 aa15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 ZNF71Q9NQZ8 489 aaPredicted RBP15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 PROCRQ9UNN8 238 aa15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 PUS1Q9Y606 427 aaKnown RBP eCLIP15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 WSB1Q9Y6I7 421 aa15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 CADP27708 2225 aa15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 DEFB108AA8MXU0 73 aa15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 KRASP01116 189 aa15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 RAB13P51153 203 aa15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 TAS2R30P59541 319 aa15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 ZNF718Q3SXZ3 478 aa15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 SPANXN5Q5MJ07 72 aa15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 C1orf162Q8NEQ5 155 aaPredicted RBP15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 CHD3Q12873 2000 aaKnown RBP15.4■□□□□ 0.06
SHKBP1-201ENST00000291842 IFNA5P01569 189 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 G6PCP35575 357 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 HNF4GQ14541 408 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 LTC4SQ16873 150 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 HAPLN4Q86UW8 402 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 ZNF645Q8N7E2 425 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 PLPPR2Q96GM1 343 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 DUSP13Q9UII6 198 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 OOEPA6NGQ2 149 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 C1QTNF9BB2RNN3 333 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 ARG1P05089 322 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 WNT2P09544 360 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 SOHLH1Q5JUK2 328 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 KRBOX4Q5JUW0 171 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 BHLHA15Q7RTS1 189 aaPredicted RBP15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 LRP11Q86VZ4 500 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 RPRMLQ8N4K4 120 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 OR2Z1Q8NG97 314 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 OR13A1Q8NGR1 328 aa15.39■□□□□ 0.05
SHKBP1-201ENST00000291842 AKAP13Q12802 2813 aa15.38■□□□□ 0.05
SHKBP1-201ENST00000291842 RP1L1Q8IWN7 2480 aaPredicted RBP15.38■□□□□ 0.05
SHKBP1-201ENST00000291842 AHRRA9YTQ3 701 aa15.38■□□□□ 0.05
SHKBP1-201ENST00000291842 DFFBO76075 338 aa15.38■□□□□ 0.05
SHKBP1-201ENST00000291842 KITLGP21583 273 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms