RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 GHRLQ9UBU3 117 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 COL7A1Q02388 2944 aa8.54□□□□□ -1.04
VPS39-208ENST00000564994 NCBP2LA6PVI3 153 aaKnown RBP8.53□□□□□ -1.04
VPS39-208ENST00000564994 H0YHG0 523 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 CA11O75493 328 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 MPIG6BO95866 241 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 CD37P11049 281 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 IL3RAP26951 378 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 CHATP28329 748 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 CD1BP29016 333 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 GPR12P47775 334 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 RPL23AP62750 156 aaKnown RBP8.53□□□□□ -1.04
VPS39-208ENST00000564994 SLC35A2P78381 396 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 TMEM30BQ3MIR4 351 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 C1orf100Q5SVJ3 147 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 SLC35E3Q7Z769 313 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 TGIF2LXQ8IUE1 241 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 STPG2Q8N412 459 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 MS4A15Q8N5U1 240 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 LINC00482Q8N8I6 264 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 OR52L2PQ8NGH6 319 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 MRAPQ8TCY5 172 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 SULT4A1Q9BR01 284 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 ABCG5Q9H222 651 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 VCXQ9H320 206 aa8.53□□□□□ -1.04
VPS39-208ENST00000564994 LIN7CQ9NUP9 197 aaKnown RBP8.53□□□□□ -1.04
VPS39-208ENST00000564994 MOSP00540 346 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 UBBP0CG47 229 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 SRMP19623 302 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 HTR2CP28335 458 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 F2RL1P55085 397 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 KRTAP10-11P60412 298 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 RPS27AP62979 156 aaKnown RBP8.52□□□□□ -1.05
VPS39-208ENST00000564994 QRFPP83859 136 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 UNC119Q13432 240 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 MED22Q15528 200 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 MORN2Q502X0 79 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 NKAPLQ5M9Q1 402 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 RBM48Q5RL73 367 aaKnown RBP8.52□□□□□ -1.05
VPS39-208ENST00000564994 GLT8D1Q68CQ7 371 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 TRAT1Q6PIZ9 186 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 C8orf86Q6ZUL3 223 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 OR2W3Q7Z3T1 314 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 C6orf201Q7Z4U5 140 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 CEACAM19Q7Z692 300 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 FOXRED2Q8IWF2 684 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 MRPL41Q8IXM3 137 aaKnown RBP8.52□□□□□ -1.05
VPS39-208ENST00000564994 ODF3L1Q8IXM7 274 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 PHYHIPQ92561 330 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 S1PR3Q99500 378 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 GFI1Q99684 422 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 NICN1Q9BSH3 213 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 FAAP24Q9BTP7 215 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 CST11Q9H112 138 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 RAB9BQ9NP90 201 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 OR2S2Q9NQN1 319 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 SCN3BQ9NY72 215 aa8.52□□□□□ -1.05
VPS39-208ENST00000564994 A0A0A6YYD4 124 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 TMEM14DPA8MWL7 114 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 SLC22A1O15245 554 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 TXNL1O43396 289 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 LANCL1O43813 399 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 UCHL1P09936 223 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 PPP1CCP36873 323 aaKnown RBP8.51□□□□□ -1.05
VPS39-208ENST00000564994 THBS3P49746 956 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 HTD2P86397 168 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 LSAMPQ13449 338 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 HSD17B12Q53GQ0 312 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 LIPKQ5VXJ0 399 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 STEAP3Q658P3 488 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 TMEM91Q6ZNR0 172 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 ZNF554Q86TJ5 538 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 FAM71E2Q8N5Q1 922 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 TMEM203Q969S6 136 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 RCC1LQ96I51 464 aaKnown RBP8.51□□□□□ -1.05
VPS39-208ENST00000564994 HSPB9Q9BQS6 159 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 TM2D1Q9BX74 207 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 TMEM59Q9BXS4 323 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 DUSP21Q9H596 190 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 KCNIP1Q9NZI2 227 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 JPT1Q9UK76 154 aa8.51□□□□□ -1.05
VPS39-208ENST00000564994 K7EIL1 84 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 AP4M1O00189 453 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 YPEL1O60688 119 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 RPLP1P05386 114 aaKnown RBP8.5□□□□□ -1.05
VPS39-208ENST00000564994 MYF6P23409 242 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 HOXD3P31249 432 aaPredicted RBP8.5□□□□□ -1.05
VPS39-208ENST00000564994 RPS25P62851 125 aaKnown RBP8.5□□□□□ -1.05
VPS39-208ENST00000564994 SLC35B1P78383 322 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 CFHR3Q02985 330 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 HMGN3Q15651 99 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 LCNL1Q6ZST4 164 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 COMMD1Q8N668 190 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 KLHL30-AS1Q8NEE0 82 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 OR8H1Q8NGG4 311 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 UFD1Q92890 307 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 RITA1Q96K30 269 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 DUX3Q96PT4 197 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 NEDD4LQ96PU5 975 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 YPEL2Q96QA6 119 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms