RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 A0A1B0GWJ7 208 aa12.53□□□□□ -0.4
NUP54-217ENST00000514987 FAM90A26D6RGX4 464 aa12.53□□□□□ -0.4
NUP54-217ENST00000514987 H0YL77 283 aa12.53□□□□□ -0.4
NUP54-217ENST00000514987 IGLV2-14P01704 120 aa12.53□□□□□ -0.4
NUP54-217ENST00000514987 OMGP23515 440 aa12.53□□□□□ -0.4
NUP54-217ENST00000514987 PAX6P26367 422 aa12.53□□□□□ -0.4
NUP54-217ENST00000514987 SULT1A1P50225 295 aa12.53□□□□□ -0.4
NUP54-217ENST00000514987 TMEM88Q6PEY1 159 aa12.53□□□□□ -0.4
NUP54-217ENST00000514987 SCRT1Q9BWW7 348 aa12.53□□□□□ -0.4
NUP54-217ENST00000514987 PARP12Q9H0J9 701 aaKnown RBP12.53□□□□□ -0.4
NUP54-217ENST00000514987 HIPK2Q9H2X6 1198 aa12.53□□□□□ -0.4
NUP54-217ENST00000514987 SMCO4Q9NRQ5 59 aa12.53□□□□□ -0.4
NUP54-217ENST00000514987 COA4Q9NYJ1 87 aa12.53□□□□□ -0.4
NUP54-217ENST00000514987 PPP1R3CQ9UQK1 317 aa12.53□□□□□ -0.4
NUP54-217ENST00000514987 BDP1A6H8Y1 2624 aa12.53□□□□□ -0.4
NUP54-217ENST00000514987 MLNRO43193 412 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 TXNL1O43396 289 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 SYNGR2O43760 224 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 AGFG2O95081 481 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 TMEM50AO95807 157 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 IFNA5P01569 189 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 CECR9P0C854 216 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 WT1P19544 449 aaPredicted RBP12.52□□□□□ -0.4
NUP54-217ENST00000514987 SPINK2P20155 84 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 IL2RGP31785 369 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 PPT1P50897 306 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 PAX9P55771 341 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 SRSF6Q13247 344 aaKnown RBP12.52□□□□□ -0.4
NUP54-217ENST00000514987 HFEQ30201 348 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 SMIM21Q3B7S5 101 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 IGFL3Q6UXB1 125 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 ACP7Q6ZNF0 438 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 BHLHA15Q7RTS1 189 aaPredicted RBP12.52□□□□□ -0.4
NUP54-217ENST00000514987 CXorf67Q86X51 503 aaPredicted RBP12.52□□□□□ -0.4
NUP54-217ENST00000514987 CBLN2Q8IUK8 224 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 C11orf53Q8IXP5 236 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 PRR18Q8N4B5 295 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 DRAM1Q8N682 238 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 ZNF645Q8N7E2 425 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 TMEM171Q8WVE6 324 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 SLC35B3Q9H1N7 401 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 UNKLQ9H9P5 680 aaKnown RBP12.52□□□□□ -0.4
NUP54-217ENST00000514987 SEBOXQ9HB31 216 aaPredicted RBP12.52□□□□□ -0.4
NUP54-217ENST00000514987 ZNF71Q9NQZ8 489 aaPredicted RBP12.52□□□□□ -0.4
NUP54-217ENST00000514987 OR14J1Q9UGF5 321 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 COL6A3P12111 3177 aa12.52□□□□□ -0.4
NUP54-217ENST00000514987 A0A0G2JRQ6 117 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 MBD3L4A6NDZ8 208 aaPredicted RBP12.52□□□□□ -0.41
NUP54-217ENST00000514987 MBD3L3A6NE82 208 aaPredicted RBP12.52□□□□□ -0.41
NUP54-217ENST00000514987 MBD3L5A6NJ08 208 aaPredicted RBP12.52□□□□□ -0.41
NUP54-217ENST00000514987 OR5H1A6NKK0 313 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 A6NLC8 198 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 KIAA1324LA8MWY0 1029 aaPredicted RBP12.52□□□□□ -0.41
NUP54-217ENST00000514987 C9JQL5 133 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 TSPAN9O75954 239 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 CST7O76096 145 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 HBE1P02100 147 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 EPHA1P21709 976 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 TLE4Q04727 773 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 IGFBP7Q16270 282 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 C3orf36Q3SXR2 165 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 AKR1C8PQ5T2L2 129 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 OR10Z1Q8NGY1 313 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 MBD3L2Q8NHZ7 208 aaPredicted RBP12.52□□□□□ -0.41
NUP54-217ENST00000514987 FAM216AQ8WUB2 273 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 NINJ1Q92982 152 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 LURAP1Q96LR2 239 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 MLXQ9UH92 298 aa12.52□□□□□ -0.41
NUP54-217ENST00000514987 DOCK7Q96N67 2140 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 TRAV39A0A0B4J263 110 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 IGHV2OR16-5A0A0B4J2B6 119 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 TNFSF13O75888 250 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 F12P00748 615 aaPredicted RBP12.51□□□□□ -0.41
NUP54-217ENST00000514987 CGAP01215 116 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 IGKV1-39P01597 117 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 IGKV1D-39P04432 117 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 ASCL1P50553 236 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 PAX5Q02548 391 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 CATR1Q13166 79 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 WDR82Q6UXN9 313 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 FAM90A1Q86YD7 464 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 ODF3L1Q8IXM7 274 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 ZNF610Q8N9Z0 462 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 STARD4Q96DR4 205 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 KCNJ16Q9NPI9 418 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 CACNG5Q9UF02 275 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 RNF150Q9ULK6 438 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 MMP24Q9Y5R2 645 aa12.51□□□□□ -0.41
NUP54-217ENST00000514987 ARID1AO14497 2285 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 PSPNO60542 156 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 C1QL1O75973 258 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 IGKV1-5P01602 117 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 OR8U8P0C7N1 319 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 ZNF16P17020 682 aaPredicted RBP12.5□□□□□ -0.41
NUP54-217ENST00000514987 FHITP49789 147 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 HBG1P69891 147 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 HBG2P69892 147 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 FOXF2Q12947 444 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 ZNF585BQ52M93 769 aa12.5□□□□□ -0.41
NUP54-217ENST00000514987 TMEM217Q8N7C4 229 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms