RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 VDAC1P21796 283 aa17.35■□□□□ 0.37
USP39-203ENST00000409470 TNFAIP6P98066 277 aaPredicted RBP17.35■□□□□ 0.37
USP39-203ENST00000409470 EDDM3AQ14507 147 aa17.35■□□□□ 0.37
USP39-203ENST00000409470 GNMTQ14749 295 aa17.35■□□□□ 0.37
USP39-203ENST00000409470 NINJ1Q92982 152 aa17.35■□□□□ 0.37
USP39-203ENST00000409470 REG4Q9BYZ8 158 aa17.35■□□□□ 0.37
USP39-203ENST00000409470 MFSD2BA6NFX1 497 aa17.34■□□□□ 0.37
USP39-203ENST00000409470 EIF5AP63241 154 aaKnown RBP17.34■□□□□ 0.37
USP39-203ENST00000409470 OR52L2PQ8NGH6 319 aa17.34■□□□□ 0.37
USP39-203ENST00000409470 PIGBOS1A0A0B4J2F0 54 aa17.33■□□□□ 0.37
USP39-203ENST00000409470 TRGV8A0A0C4DH27 118 aa17.33■□□□□ 0.37
USP39-203ENST00000409470 DPRXA6NFQ7 191 aa17.33■□□□□ 0.37
USP39-203ENST00000409470 IGHV1-46P01743 117 aa17.33■□□□□ 0.37
USP39-203ENST00000409470 THBDP07204 575 aa17.33■□□□□ 0.37
USP39-203ENST00000409470 TNFSF4P23510 183 aa17.33■□□□□ 0.37
USP39-203ENST00000409470 NKX2-1P43699 371 aaPredicted RBP17.33■□□□□ 0.37
USP39-203ENST00000409470 P2RX3P56373 397 aa17.33■□□□□ 0.37
USP39-203ENST00000409470 NMSQ5H8A3 153 aa17.33■□□□□ 0.37
USP39-203ENST00000409470 RPL7L1Q6DKI1 246 aaKnown RBP17.33■□□□□ 0.37
USP39-203ENST00000409470 OR13A1Q8NGR1 328 aa17.33■□□□□ 0.37
USP39-203ENST00000409470 PPP1R35Q8TAP8 253 aa17.33■□□□□ 0.37
USP39-203ENST00000409470 LURAP1Q96LR2 239 aa17.33■□□□□ 0.37
USP39-203ENST00000409470 VKORC1Q9BQB6 163 aa17.33■□□□□ 0.37
USP39-203ENST00000409470 FBXL17Q9UF56 701 aa17.33■□□□□ 0.37
USP39-203ENST00000409470 SESN1Q9Y6P5 492 aa17.33■□□□□ 0.37
USP39-203ENST00000409470 ZNF737O75373 536 aa17.33■□□□□ 0.36
USP39-203ENST00000409470 ZNF16P17020 682 aaPredicted RBP17.33■□□□□ 0.36
USP39-203ENST00000409470 TMEM33P57088 247 aa17.33■□□□□ 0.36
USP39-203ENST00000409470 BSPH1Q075Z2 132 aa17.33■□□□□ 0.36
USP39-203ENST00000409470 SSX8Q7RTT4 187 aa17.33■□□□□ 0.36
USP39-203ENST00000409470 TMED6Q8WW62 240 aa17.33■□□□□ 0.36
USP39-203ENST00000409470 ARL11Q969Q4 196 aa17.33■□□□□ 0.36
USP39-203ENST00000409470 SMIM3Q9BZL3 60 aa17.33■□□□□ 0.36
USP39-203ENST00000409470 IL19Q9UHD0 177 aa17.33■□□□□ 0.36
USP39-203ENST00000409470 ZDHHC8Q9ULC8 765 aa17.33■□□□□ 0.36
USP39-203ENST00000409470 GPR137BO60478 399 aa17.32■□□□□ 0.36
USP39-203ENST00000409470 LHBP01229 141 aa17.32■□□□□ 0.36
USP39-203ENST00000409470 SSTR5P35346 364 aa17.32■□□□□ 0.36
USP39-203ENST00000409470 GATA4P43694 442 aa17.32■□□□□ 0.36
USP39-203ENST00000409470 P2RY1P47900 373 aa17.32■□□□□ 0.36
USP39-203ENST00000409470 DRAM1Q8N682 238 aa17.32■□□□□ 0.36
USP39-203ENST00000409470 MARVELD3Q96A59 401 aa17.32■□□□□ 0.36
USP39-203ENST00000409470 SNX22Q96L94 193 aa17.32■□□□□ 0.36
USP39-203ENST00000409470 LIN7CQ9NUP9 197 aaKnown RBP17.32■□□□□ 0.36
USP39-203ENST00000409470 TLN1Q9Y490 2541 aaKnown RBP17.32■□□□□ 0.36
USP39-203ENST00000409470 IGF2RP11717 2491 aa17.32■□□□□ 0.36
USP39-203ENST00000409470 PCNX1Q96RV3 2341 aa17.32■□□□□ 0.36
USP39-203ENST00000409470 MEX3AA1L020 520 aaKnown RBP17.31■□□□□ 0.36
USP39-203ENST00000409470 WNT2P09544 360 aa17.31■□□□□ 0.36
USP39-203ENST00000409470 CASP6P55212 293 aa17.31■□□□□ 0.36
USP39-203ENST00000409470 GPR157Q5UAW9 335 aa17.31■□□□□ 0.36
USP39-203ENST00000409470 RNASE11Q8TAA1 199 aaKnown RBP17.31■□□□□ 0.36
USP39-203ENST00000409470 PLEKHF2Q9H8W4 249 aa17.31■□□□□ 0.36
USP39-203ENST00000409470 RNF150Q9ULK6 438 aa17.31■□□□□ 0.36
USP39-203ENST00000409470 CD80P33681 288 aa17.31■□□□□ 0.36
USP39-203ENST00000409470 TRAT1Q6PIZ9 186 aa17.31■□□□□ 0.36
USP39-203ENST00000409470 CLEC9AQ6UXN8 241 aa17.31■□□□□ 0.36
USP39-203ENST00000409470 DMBX1Q8NFW5 382 aa17.31■□□□□ 0.36
USP39-203ENST00000409470 SEBOXQ9HB31 216 aaPredicted RBP17.31■□□□□ 0.36
USP39-203ENST00000409470 GCM1Q9NP62 436 aa17.31■□□□□ 0.36
USP39-203ENST00000409470 RNF7Q9UBF6 113 aa17.31■□□□□ 0.36
USP39-203ENST00000409470 PLCE1Q9P212 2302 aa17.31■□□□□ 0.36
USP39-203ENST00000409470 ICE1Q9Y2F5 2266 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 CLEC18AA5D8T8 446 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 MGST3O14880 152 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 SPINT2O43291 252 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 PVALBP20472 110 aaPredicted RBP17.3■□□□□ 0.36
USP39-203ENST00000409470 PPP1CCP36873 323 aaKnown RBP17.3■□□□□ 0.36
USP39-203ENST00000409470 POLR2GP62487 172 aaKnown RBP eCLIP17.3■□□□□ 0.36
USP39-203ENST00000409470 PAX5Q02548 391 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 CXorf66Q5JRM2 361 aaPredicted RBP17.3■□□□□ 0.36
USP39-203ENST00000409470 FAM53AQ6NSI3 398 aaPredicted RBP17.3■□□□□ 0.36
USP39-203ENST00000409470 ZNF645Q8N7E2 425 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 CLEC18CQ8NCF0 446 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 RFESDQ8TAC1 157 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 LRRC20Q8TCA0 184 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 ERGIC1Q969X5 290 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 DCTN5Q9BTE1 182 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 OR2D2Q9H210 308 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 ESRP2Q9H6T0 727 aaKnown RBP17.3■□□□□ 0.36
USP39-203ENST00000409470 RNF212BA8MTL3 300 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 OR4A8P0C604 315 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 EPHA1P21709 976 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 FAM201AQ5SY85 155 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 RNF141Q8WVD5 230 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 MAGT1Q9H0U3 335 aa17.3■□□□□ 0.36
USP39-203ENST00000409470 ODAMA1E959 279 aa17.29■□□□□ 0.36
USP39-203ENST00000409470 SSSCA1O60232 199 aa17.29■□□□□ 0.36
USP39-203ENST00000409470 JTBO76095 146 aa17.29■□□□□ 0.36
USP39-203ENST00000409470 KLRB1Q12918 225 aa17.29■□□□□ 0.36
USP39-203ENST00000409470 ADIPOQQ15848 244 aa17.29■□□□□ 0.36
USP39-203ENST00000409470 EIF5AL1Q6IS14 154 aaKnown RBP17.29■□□□□ 0.36
USP39-203ENST00000409470 ZNRF1Q8ND25 227 aa17.29■□□□□ 0.36
USP39-203ENST00000409470 ABHD14BQ96IU4 210 aa17.29■□□□□ 0.36
USP39-203ENST00000409470 WFIKKN1Q96NZ8 548 aa17.29■□□□□ 0.36
USP39-203ENST00000409470 BARX1Q9HBU1 254 aaPredicted RBP17.29■□□□□ 0.36
USP39-203ENST00000409470 CACNA1DQ01668 2161 aa17.28■□□□□ 0.36
USP39-203ENST00000409470 IGHV3-43A0A0B4J1X8 118 aa17.28■□□□□ 0.36
USP39-203ENST00000409470 GAPDHP04406 335 aaKnown RBP17.28■□□□□ 0.36
USP39-203ENST00000409470 IGHV3-43DP0DP04 118 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms