RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 RPL36A-HNRNPH2H7BZ11 118 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 UBE2L6O14933 153 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 TIAF1O95411 115 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 HMGA2P52926 109 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 LYZL2Q7Z4W2 148 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 SLC2A9Q9NRM0 540 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 LAMB2P55268 1798 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 PPIAL4CA0A0B4J2A2 164 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 C11orf94C9JXX5 98 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 C1QAP02745 245 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 PPIAL4GP0DN37 164 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 ZNF738Q8NE65 137 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 SCNM1Q9BWG6 230 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 CHST5Q9GZS9 411 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 PSMB2P49721 201 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 ZNF273Q14593 569 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 SEZ6L2Q6UXD5 910 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 OR4A5Q8NH83 315 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 SNRNP40Q96DI7 357 aaKnown RBP13.52□□□□□ -0.25
PTPRF-201ENST00000359947 MTCL1Q9Y4B5 1905 aaKnown RBP13.52□□□□□ -0.25
PTPRF-201ENST00000359947 SS18L1O75177 396 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-201ENST00000359947 CTSDP07339 412 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-201ENST00000359947 INHBBP09529 407 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 COX6A1P12074 109 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 TOMM20LQ6UXN7 152 aa13.52□□□□□ -0.25
PTPRF-201ENST00000359947 QSER1Q2KHR3 1735 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 LOC105371242A0A075B767 164 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 LOC389332A0A1B0GUA5 103 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 HBZP02008 142 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 AREGP15514 252 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 FOXB2Q5VYV0 432 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 WNT2BQ93097 391 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 ANGPTL4Q9BY76 406 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 SCN4AP35499 1836 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 DMKNQ6E0U4 476 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-201ENST00000359947 VAMP8Q9BV40 100 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 PLAUP00749 431 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 IGKV3-20P01619 116 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 GABRA6Q16445 453 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 MUC15Q8N387 334 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 HIGD1AQ9Y241 93 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 KLHDC2Q9Y2U9 406 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 SLC25A42Q86VD7 318 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 RNF133Q8WVZ7 376 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 FAM210BQ96KR6 192 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 LPAR5Q9H1C0 372 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 ZFC3H1O60293 1989 aaKnown RBP13.51□□□□□ -0.25
PTPRF-201ENST00000359947 C1QCP02747 245 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 REG1AP05451 166 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 CSRP2Q16527 193 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 DCAF12L2Q5VW00 463 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 METTL26Q96S19 204 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 SIPA1L3O60292 1781 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-201ENST00000359947 A0A1W2PPC1 479 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 ALX3O95076 343 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 KLHDC1Q8N7A1 406 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 RPS4Y2Q8TD47 263 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 ABHD17AQ96GS6 310 aa13.51□□□□□ -0.25
PTPRF-201ENST00000359947 A0A1W2PRX2 142 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 ANKRD55Q3KP44 614 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 OIT3Q8WWZ8 545 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 OR2D3Q8NGH3 330 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 CIDEAO60543 219 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 C10orf111Q8N326 155 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 MRPL24Q96A35 216 aaKnown RBP13.5□□□□□ -0.25
PTPRF-201ENST00000359947 MMP26Q9NRE1 261 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 ZDHHC8Q9ULC8 765 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 NEU3Q9UQ49 428 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 MELTFP08582 738 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 B2MP61769 119 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 LCN2P80188 198 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 ANKRD20A5PA0PJZ0 165 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 KIR3DL2P43630 455 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 ACSF3Q4G176 576 aaPredicted RBP13.5□□□□□ -0.25
PTPRF-201ENST00000359947 TEX261Q6UWH6 196 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 FADS6Q8N9I5 356 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 KCNK17Q96T54 332 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 TLNRD1Q9H1K6 362 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 OR2H2O95918 312 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 TWIST1Q15672 202 aa13.5□□□□□ -0.25
PTPRF-201ENST00000359947 SLIRPQ9GZT3 109 aaKnown RBP13.5□□□□□ -0.25
PTPRF-201ENST00000359947 RCC2Q9P258 522 aaKnown RBP13.5□□□□□ -0.25
PTPRF-201ENST00000359947 IGKV3OR2-268A0A0C4DH90 116 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 DHRS7CA6NNS2 312 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 CEACAM21Q3KPI0 293 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 IGSF11Q5DX21 431 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 MRPL54Q6P161 138 aaKnown RBP13.49□□□□□ -0.25
PTPRF-201ENST00000359947 SCGB1D4Q6XE38 83 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 FAM216AQ8WUB2 273 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 DNASE2BQ8WZ79 361 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 COL4A5P29400 1685 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 IGHV3-35A0A0C4DH35 117 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 IZUMO4Q1ZYL8 232 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 LGALSLQ3ZCW2 172 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-201ENST00000359947 SRXN1Q9BYN0 137 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 TMEM50BP56557 158 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 RBM11P57052 281 aaKnown RBP13.49□□□□□ -0.25
PTPRF-201ENST00000359947 IL24Q13007 206 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 KLF9Q13886 244 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-201ENST00000359947 LY6DQ14210 128 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms