RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 NXT1Q9UKK6 140 aaKnown RBP4.55□□□□□ -1.68
USP28-213ENST00000544967 SLC45A2Q9UMX9 530 aa4.55□□□□□ -1.68
USP28-213ENST00000544967 FUT9Q9Y231 359 aa4.55□□□□□ -1.68
USP28-213ENST00000544967 ASXL3Q9C0F0 2248 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 IGLV1-36A0A0B4J1U3 117 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 A0A1B0GX78 115 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 ZNF705GA8MUZ8 300 aaPredicted RBP4.54□□□□□ -1.68
USP28-213ENST00000544967 DNPH1O43598 174 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 KLF7O75840 302 aaPredicted RBP4.54□□□□□ -1.68
USP28-213ENST00000544967 OR4A8P0C604 315 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 EWSR1Q01844 656 aaKnown RBP eCLIP4.54□□□□□ -1.68
USP28-213ENST00000544967 UBE2V1Q13404 147 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 TMEM187Q14656 261 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 C1QL3Q5VWW1 255 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 TCF24Q7RTU0 167 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 FOXRED2Q8IWF2 684 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 LGI3Q8N145 548 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 GVQW1Q8N7I0 195 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 GRHL3Q8TE85 626 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 SSC4DQ8WTU2 575 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 TSLPQ969D9 159 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 GMPPAQ96IJ6 420 aaPredicted RBP4.54□□□□□ -1.68
USP28-213ENST00000544967 LPAR4Q99677 370 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 RARRES2Q99969 163 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 NAA60Q9H7X0 242 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 GEMIN7Q9H840 131 aaKnown RBP4.54□□□□□ -1.68
USP28-213ENST00000544967 DNAJC4Q9NNZ3 241 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 OR6C3Q9NZP0 311 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 KIF26BQ2KJY2 2108 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 TRAV25A0A0B4J276 109 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 LOC107986453A0A1B0GWG9 222 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 WNT2P09544 360 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 AMY2BP19961 511 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 TCN2P20062 427 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 CCL1P22362 96 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 ATP6V0CP27449 155 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 CNN1P51911 297 aaKnown RBP4.54□□□□□ -1.68
USP28-213ENST00000544967 UCNP55089 124 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 SLC37A1P57057 533 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 CTXN1P60606 82 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 GNMTQ14749 295 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 CT83Q5H943 113 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 IGFL2Q6UWQ7 119 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 DPY19L4Q7Z388 723 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 MRGPRGQ86SM5 289 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 OR2G3Q8NGZ4 309 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 ZNF519Q8TB69 540 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 TSPAN32Q96QS1 320 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 OR5B12Q96R08 314 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 KCNK15Q9H427 330 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 LANCL2Q9NS86 450 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 PLAGL1Q9UM63 463 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 B9D1Q9UPM9 204 aa4.54□□□□□ -1.68
USP28-213ENST00000544967 CSN2P05814 226 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 CCL4P13236 92 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 DTYMKP23919 212 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 FHITP49789 147 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 RAB7AP51149 207 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 TAS2R30P59541 319 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 ODF4Q2M2E3 257 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 PDLIM3Q53GG5 364 aaPredicted RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 C4orf48Q5BLP8 95 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 PDZD11Q5EBL8 140 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 FNDC7Q5VTL7 733 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 KCNIP4Q6PIL6 250 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 DNM1P34Q6PK57 102 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 TMEM182Q6ZP80 229 aaPredicted RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 LIAT1Q6ZQX7 453 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 ERASQ7Z444 233 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 SLC38A9Q8NBW4 561 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 CHST4Q8NCG5 386 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 OR5D14Q8NGL3 314 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 OR5B3Q8NH48 314 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 OR2V1Q8NHB1 315 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 C1orf147Q96MC9 270 aaPredicted RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 FAM110AQ9BQ89 295 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 FGF21Q9NSA1 209 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 MRPL27Q9P0M9 148 aaKnown RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 CGGBP1Q9UFW8 167 aaPredicted RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 RARRES3Q9UL19 164 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 FAM186AA6NE01 2351 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 ITPR1Q14643 2758 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 A0A1W2PPV4 95 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 SERINC4A6NH21 518 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 H0YGG7 62 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 GPR75O95800 540 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 PGA3P0DJD8 388 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 C8orf89P0DMQ9 161 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 SLC25A6P12236 298 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 BMP5P22003 454 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 SLC6A8P48029 635 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 EMDP50402 254 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 ZNF133P52736 654 aaPredicted RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 EFNA3P52797 238 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 RPL23AP62750 156 aaKnown RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 RNPS1Q15287 305 aaKnown RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 INO80CQ6PI98 192 aaPredicted RBP4.53□□□□□ -1.68
USP28-213ENST00000544967 PLXDC2Q6UX71 529 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 Q6ZSR3 168 aa4.53□□□□□ -1.68
USP28-213ENST00000544967 BATF2Q8N1L9 274 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 125 ms