RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ZNF766Q5HY98 468 aa9.02□□□□□ -0.96
LIMCH1-203ENST00000396595 ZNF506Q5JVG8 444 aa9.02□□□□□ -0.96
LIMCH1-203ENST00000396595 GUSBP11Q6P575 273 aa9.02□□□□□ -0.96
LIMCH1-203ENST00000396595 OVCH2Q7RTZ1 564 aa9.02□□□□□ -0.96
LIMCH1-203ENST00000396595 RPEQ96AT9 228 aa9.02□□□□□ -0.96
LIMCH1-203ENST00000396595 ARAP2Q8WZ64 1704 aa9.02□□□□□ -0.96
LIMCH1-203ENST00000396595 ECM29Q5VYK3 1845 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 FAM74A7A6NL05 159 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 UBE2L3P68036 154 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 IFITM3Q01628 133 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 TSPO2Q5TGU0 170 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 MRGPRGQ86SM5 289 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 HSPB9Q9BQS6 159 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 RAB33BQ9H082 229 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 CXXC4Q9H2H0 198 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 C11orf94C9JXX5 98 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 CD1AP06126 327 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 EPHA8P29322 1005 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 EWSR1Q01844 656 aaKnown RBP eCLIP9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 IZUMO4Q1ZYL8 232 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 ASCL4Q6XD76 172 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 MRGPRDQ8TDS7 321 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 PTX4Q96A99 478 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 DOCK2Q92608 1830 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 KLF7O75840 302 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 PPP1CAP62136 330 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 MPV17LQ2QL34 196 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 C1QL3Q5VWW1 255 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 TMEM211Q6ICI0 200 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 TMEM183AQ8IXX5 376 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 VSTM2AQ8TAG5 236 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 PLA2G3Q9NZ20 509 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 TNFSF18Q9UNG2 199 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 ADAMTSL3P82987 1691 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 TRGV8A0A0C4DH27 118 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 PQLC2LA1A4F0 135 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 H7C2G1 150 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 MMP16P51512 607 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 FAM3BP58499 235 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 NAAAQ02083 359 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 SLC25A34Q6PIV7 304 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 SSX8Q7RTT4 187 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 NUDT11Q96G61 164 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 SMDT1Q9H4I9 107 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 PRR13Q9NZ81 148 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 KCNK7Q9Y2U2 307 aa9.02□□□□□ -0.97
LIMCH1-203ENST00000396595 SIGLEC5O15389 551 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 PTP4A3O75365 173 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 HOXB1P14653 301 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 BRS3P32247 399 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 LURAP1LQ8IV03 231 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 NUDT10Q8NFP7 164 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 WISP3O95389 354 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 VSIG8P0DPA2 414 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 ZNF83P51522 516 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 C16orf47Q6ZP98 133 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 R3HDM4Q96D70 268 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 SIGMAR1Q99720 223 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 GABRG3Q99928 467 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 PIMREGQ9BSJ6 248 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 THYN1Q9P016 225 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 ST6GALNAC2Q9UJ37 374 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 PCM1Q15154 2024 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 IGHV3-43A0A0B4J1X8 118 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 H3BQ15 152 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 PATE4P0C8F1 98 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 IGHV3-43DP0DP04 118 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 SSPNQ14714 243 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 PLPPR5Q32ZL2 321 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 DHRS7CA6NNS2 312 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 RPS4XP62701 263 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 ANKRD55Q3KP44 614 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 GAPTQ8N292 157 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 D2HGDHQ8N465 521 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 OR8B3Q8NGG8 313 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 OR1P1Q8NH06 330 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 GGACTQ9BVM4 153 aa9.01□□□□□ -0.97
LIMCH1-203ENST00000396595 KNTC1P50748 2209 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 SPINK9Q5DT21 86 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 TEX29Q8N6K0 151 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 ARRDC1-AS1Q9H2J1 176 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 GSN-AS1Q9NRJ2 163 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 TNRC6CQ9HCJ0 1690 aaKnown RBP9□□□□□ -0.97
LIMCH1-203ENST00000396595 TNFSF14O43557 240 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 CA11O75493 328 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 RIPPLY3P57055 190 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 NXPH1P58417 271 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 SLC35E3Q7Z769 313 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 PDPNQ86YL7 162 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 OR2Y1Q8NGV0 311 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 TM4SF19Q96DZ7 209 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 CYR61O00622 381 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 NTN1O95631 604 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 KLF3P57682 345 aaPredicted RBP9□□□□□ -0.97
LIMCH1-203ENST00000396595 MRPS11P82912 194 aaKnown RBP9□□□□□ -0.97
LIMCH1-203ENST00000396595 MYOZ3Q8TDC0 251 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 PMCHL2Q9BQD1 86 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 HES7Q9BYE0 225 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 MRPL37Q9BZE1 423 aaKnown RBP9□□□□□ -0.97
LIMCH1-203ENST00000396595 CES1P1Q9UKY3 287 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms