RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SDSLQ96GA7 329 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 SMIM8Q96KF7 97 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 CHST5Q9GZS9 411 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 ZNF665Q9H7R5 613 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 GLRX2Q9NS18 164 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 TMEM100Q9NV29 134 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 TNCP24821 2201 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 TUSC2O75896 110 aa7.46□□□□□ -1.21
USP40-203ENST00000427112 SNRPCP09234 159 aaKnown RBP7.46□□□□□ -1.21
USP40-203ENST00000427112 H2AFB1P0C5Y9 115 aa7.46□□□□□ -1.21
USP40-203ENST00000427112 OR8U8P0C7N1 319 aa7.46□□□□□ -1.21
USP40-203ENST00000427112 CLDN15P56746 228 aa7.46□□□□□ -1.21
USP40-203ENST00000427112 GRB2P62993 217 aaKnown RBP7.46□□□□□ -1.21
USP40-203ENST00000427112 TMEM187Q14656 261 aa7.46□□□□□ -1.21
USP40-203ENST00000427112 VHLLQ6RSH7 139 aa7.46□□□□□ -1.21
USP40-203ENST00000427112 IL34Q6ZMJ4 242 aa7.46□□□□□ -1.21
USP40-203ENST00000427112 LHFPL1Q86WI0 220 aa7.46□□□□□ -1.21
USP40-203ENST00000427112 PLPP5Q8NEB5 264 aa7.46□□□□□ -1.21
USP40-203ENST00000427112 IFI44Q8TCB0 444 aa7.46□□□□□ -1.21
USP40-203ENST00000427112 RPUSD4Q96CM3 377 aaKnown RBP7.46□□□□□ -1.21
USP40-203ENST00000427112 MVB12AQ96EY5 273 aa7.46□□□□□ -1.21
USP40-203ENST00000427112 Q96M66 194 aa7.46□□□□□ -1.21
USP40-203ENST00000427112 PLK3Q9H4B4 646 aa7.46□□□□□ -1.21
USP40-203ENST00000427112 CARHSP1Q9Y2V2 147 aaKnown RBP7.46□□□□□ -1.21
USP40-203ENST00000427112 COL12A1Q99715 3063 aa7.46□□□□□ -1.22
USP40-203ENST00000427112 A0A0G2JRQ6 117 aa7.46□□□□□ -1.22
USP40-203ENST00000427112 CRYM-AS1A6NIL9 109 aa7.46□□□□□ -1.22
USP40-203ENST00000427112 DEFB108AA8MXU0 73 aa7.46□□□□□ -1.22
USP40-203ENST00000427112 H3BQ15 152 aa7.46□□□□□ -1.22
USP40-203ENST00000427112 ZIC3O60481 467 aa7.46□□□□□ -1.22
USP40-203ENST00000427112 PRB4P10163 310 aaPredicted RBP7.46□□□□□ -1.22
USP40-203ENST00000427112 RND3P61587 244 aa7.46□□□□□ -1.22
USP40-203ENST00000427112 SPANXN5Q5MJ07 72 aa7.46□□□□□ -1.22
USP40-203ENST00000427112 CPEB3Q8NE35 698 aaKnown RBP7.46□□□□□ -1.22
USP40-203ENST00000427112 SNX22Q96L94 193 aa7.46□□□□□ -1.22
USP40-203ENST00000427112 PLXNB1O43157 2135 aa7.46□□□□□ -1.22
USP40-203ENST00000427112 LRP4O75096 1905 aa7.46□□□□□ -1.22
USP40-203ENST00000427112 RELNP78509 3460 aa7.46□□□□□ -1.22
USP40-203ENST00000427112 C3orf85A0A1B0GTC6 90 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 PINLYPA6NC86 204 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 HSPB2A8KAH6 182 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 PPYP01298 95 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 IGHMP01871 453 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 TCN2P20062 427 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 DLK1P80370 383 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 RTP5Q14D33 572 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 RAB30Q15771 203 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 HSPB2Q16082 182 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 OR2C3Q8N628 320 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 ZIC4Q8N9L1 334 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 OR10D3Q8NH80 312 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 OR1F12Q8NHA8 337 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 RFESDQ8TAC1 157 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 ZNF286AQ9HBT8 521 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 ERRFI1Q9UJM3 462 aaPredicted RBP7.45□□□□□ -1.22
USP40-203ENST00000427112 HS3ST3B1Q9Y662 390 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 ATG2AQ2TAZ0 1938 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 IGHV3-43A0A0B4J1X8 118 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 ZNF732B4DXR9 585 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 E5RGE8 158 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 IGHV3-43DP0DP04 118 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 RPS23P62266 143 aaKnown RBP7.45□□□□□ -1.22
USP40-203ENST00000427112 ZP4Q12836 540 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 OR2T2Q6IF00 324 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 C20orf204Q6ZNR8 217 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 ZDHHC23Q8IYP9 409 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 OR1A1Q9P1Q5 309 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 WNK2Q9Y3S1 2297 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 CEBPZOSA8MTT3 80 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 SERPINE3A8MV23 424 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 RHBDL1O75783 438 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 CD55P08174 381 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 SSR4P51571 173 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 ERVFRD-1P60508 538 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 OR8G1Q15617 311 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 ALKBH6Q3KRA9 238 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 DMRTA1Q5VZB9 504 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 FAHD2BQ6P2I3 314 aaPredicted RBP7.45□□□□□ -1.22
USP40-203ENST00000427112 ZNF429Q86V71 674 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 CMTM1Q8IZ96 169 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 ADPRHL1Q8NDY3 354 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 GATAD1Q8WUU5 269 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 NABP1Q96AH0 204 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 FAHD2AQ96GK7 314 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 FOXB1Q99853 325 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 WSB1Q9Y6I7 421 aa7.45□□□□□ -1.22
USP40-203ENST00000427112 CD5P06127 495 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 SMIM6P0DI80 62 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 PSG2P11465 335 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 SRFP11831 508 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 TMEM11P17152 192 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 HLA-GP17693 338 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 CHATP28329 748 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 CXCL12P48061 93 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 EIF5AP63241 154 aaKnown RBP7.44□□□□□ -1.22
USP40-203ENST00000427112 OPN5Q6U736 354 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 BTNL3Q6UXE8 466 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 LIAT1Q6ZQX7 453 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 GCNT2Q8N0V5 402 aa7.44□□□□□ -1.22
USP40-203ENST00000427112 TMEM105Q8N8V8 129 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms