RNA–Protein interactions for RNA: YLR207W

HRD3, Transcript of ER membrane protein that plays a central role in ERAD, yeast

Gene HRD3, Length 2,502 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HRD3	YLR207W	VPS13	Q07878	3144 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	MSS18	P08593	268 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	MSB1	P21339	1137 aa	Known RBP	2.75	□□□□□ -1.97
HRD3	YLR207W	YKR051W	P36142	418 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	FLR1	P38124	548 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	ZRG8	P40021	1076 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	PRY1	P47032	299 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	HXT16	P47185	567 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	MTR3	P48240	250 aa	Predicted RBP	2.75	□□□□□ -1.97
HRD3	YLR207W	ZIP2	P53061	704 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	YGR012W	P53206	393 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	ENV11	P53246	860 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	ERO1	Q03103	563 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	TRS130	Q03660	1102 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	XYL2	Q07993	356 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	RPP2A	P05319	106 aa	Known RBP	2.74	□□□□□ -1.97
HRD3	YLR207W	CHS2	P14180	963 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	IMP2'	P32351	346 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	RPD3	P32561	433 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	MCX1	P38323	520 aa	Predicted RBP	2.74	□□□□□ -1.97
HRD3	YLR207W	FUN12	P39730	1002 aa	Known RBP	2.74	□□□□□ -1.97
HRD3	YLR207W	SAW1	P39735	261 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	RAD26	P40352	1085 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	CCT8	P47079	568 aa	Known RBP	2.74	□□□□□ -1.97
HRD3	YLR207W	MPP10	P47083	593 aa	Known RBP	2.74	□□□□□ -1.97
HRD3	YLR207W	MEP3	P53390	489 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	TEP1	P53916	434 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	HDA1	P53973	706 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	2.74	□□□□□ -1.97	not detected
HRD3	YLR207W	HAP1	P0CE41	1502 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	HOM3	P10869	527 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	FUR1	P18562	216 aa	Known RBP	2.74	□□□□□ -1.97
HRD3	YLR207W	ADP1	P25371	1049 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	SEG2	P34250	1132 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	SAF1	P38352	637 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	ASK10	P48361	1146 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	PCL10	P53124	433 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	YBP2	P53169	641 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	RSC1	P53236	928 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	DUS1	P53759	423 aa	Known RBP	2.74	□□□□□ -1.97
HRD3	YLR207W	CNM67	P53865	581 aa	Known RBP	2.74	□□□□□ -1.97
HRD3	YLR207W	TDA6	Q06466	467 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	HFI1	Q12060	488 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	PUS1	Q12211	544 aa	Known RBP	2.74	□□□□□ -1.97
HRD3	YLR207W	Q0142	Q9ZZW4	58 aa		2.74	□□□□□ -1.97
HRD3	YLR207W	YML133C	Q03099	1374 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	YLL067C	Q07888	1374 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	YLL066C	Q99208	1374 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	MRP7	P12687	371 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	SLC1	P33333	303 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	NUP120	P35729	1037 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	YKL050C	P35736	922 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	OAF3	P36023	863 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	SDS22	P36047	338 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	YKR018C	P36114	725 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	UBS1	P38290	277 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	VPS8	P39702	1274 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	PZF1	P39933	429 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	KAP123	P40069	1113 aa	Known RBP	2.73	□□□□□ -1.97
HRD3	YLR207W	SMK1	P41808	388 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	NSG2	P53898	299 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	YMR210W	Q03649	449 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	YDL176W	Q12027	708 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	HAL9	Q12180	1030 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	RPS21B	Q3E754	87 aa	Known RBP	2.73	□□□□□ -1.97
HRD3	YLR207W	RPS21A	P0C0V8	87 aa	Known RBP	2.73	□□□□□ -1.97
HRD3	YLR207W	CMP2	P14747	604 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	DGR2	P32330	852 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	PET309	P32522	965 aa	Predicted RBP	2.73	□□□□□ -1.97
HRD3	YLR207W	MUM2	P38236	366 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	DUN1	P39009	513 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	FAF1	P40546	346 aa	Predicted RBP	2.73	□□□□□ -1.97
HRD3	YLR207W	OYE3	P41816	400 aa	Predicted RBP	2.73	□□□□□ -1.97
HRD3	YLR207W	SSY5	P47002	699 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	BNA1	P47096	177 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	YMR187C	Q03236	431 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	SSY1	Q03770	852 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	2.73	□□□□□ -1.97	not detected
HRD3	YLR207W	NUR1	Q12066	484 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	KCS1	Q12494	1050 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	YLR149C	Q99296	730 aa		2.73	□□□□□ -1.97
HRD3	YLR207W	MIH1	P23748	554 aa		2.72	□□□□□ -1.97
HRD3	YLR207W	PGS1	P25578	521 aa		2.72	□□□□□ -1.97
HRD3	YLR207W	NGG1	P32494	702 aa		2.72	□□□□□ -1.97
HRD3	YLR207W	RPT3	P33298	428 aa	Known RBP	2.72	□□□□□ -1.97
HRD3	YLR207W	SER1	P33330	395 aa	Known RBP	2.72	□□□□□ -1.97
HRD3	YLR207W	ATG19	P35193	415 aa		2.72	□□□□□ -1.97
HRD3	YLR207W	PEX7	P39108	375 aa		2.72	□□□□□ -1.97
HRD3	YLR207W	ENP2	P48234	707 aa	Known RBP	2.72	□□□□□ -1.97
HRD3	YLR207W	RBG2	P53295	368 aa	Known RBP	2.72	□□□□□ -1.97
HRD3	YLR207W	TIM50	Q02776	476 aa		2.72	□□□□□ -1.97
HRD3	YLR207W	MSC2	Q03455	724 aa		2.72	□□□□□ -1.97
HRD3	YLR207W	RCF1	Q03713	159 aa		2.72	□□□□□ -1.97
HRD3	YLR207W	SSL1	Q04673	461 aa	Predicted RBP	2.72	□□□□□ -1.97
HRD3	YLR207W	THI21	Q08975	551 aa		2.72	□□□□□ -1.97
HRD3	YLR207W	APM4	Q99186	491 aa		2.72	□□□□□ -1.97
HRD3	YLR207W	NUC1	P08466	329 aa		2.72	□□□□□ -1.97
HRD3	YLR207W	SAN1	P22470	610 aa		2.72	□□□□□ -1.97
HRD3	YLR207W	VMA8	P32610	256 aa	Known RBP	2.72	□□□□□ -1.97
HRD3	YLR207W	HXT6	P39003	570 aa	Known RBP	2.72	□□□□□ -1.97

Retrieved 100 of 5,963 RNA–protein pairs in 14.3 ms