RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C SPO1P53541 631 aa2.6□□□□□ -1.99
VPS35YJL154C RNT1Q02555 471 aa2.6□□□□□ -1.99
VPS35YJL154C SLU7Q02775 382 aaKnown RBP2.6□□□□□ -1.99
VPS35YJL154C ECM38Q05902 660 aaPredicted RBP2.6□□□□□ -1.99
VPS35YJL154C NGL1Q08213 363 aaKnown RBP2.6□□□□□ -1.99
VPS35YJL154C ECM5Q03214 1411 aa2.59□□□□□ -1.99
VPS35YJL154C ERG4P25340 473 aa2.59□□□□□ -1.99
VPS35YJL154C CTS1P29029 562 aa2.59□□□□□ -1.99
VPS35YJL154C DCG1P32460 244 aa2.59□□□□□ -1.99
VPS35YJL154C SER1P33330 395 aaKnown RBP2.59□□□□□ -1.99
VPS35YJL154C ENP1P38333 483 aaKnown RBP2.59□□□□□ -1.99
VPS35YJL154C SUL1P38359 859 aa2.59□□□□□ -1.99
VPS35YJL154C TAF4P50105 388 aa2.59□□□□□ -1.99
VPS35YJL154C FRE5Q08908 694 aa2.59□□□□□ -1.99
VPS35YJL154C AIM41Q12032 185 aa2.59□□□□□ -1.99
VPS35YJL154C CWC2Q12046 339 aaPredicted RBP2.59□□□□□ -1.99
VPS35YJL154C PTP2P29461 750 aa2.59□□□□□ -2
VPS35YJL154C YKL222CP35995 705 aa2.59□□□□□ -2
VPS35YJL154C SRP68P38687 599 aaKnown RBP2.59□□□□□ -2
VPS35YJL154C PHO23P50947 330 aa2.59□□□□□ -2
VPS35YJL154C MTL1P53214 551 aa2.59□□□□□ -2
VPS35YJL154C MRPS35P53292 345 aa2.59□□□□□ -2
VPS35YJL154C MET14Q02196 202 aa2.59□□□□□ -2
VPS35YJL154C VPS36Q06696 566 aa2.59□□□□□ -2
VPS35YJL154C NUR1Q12066 484 aa2.59□□□□□ -2
VPS35YJL154C POM34Q12445 299 aa2.59□□□□□ -2
VPS35YJL154C PMA1P05030 918 aaKnown RBP2.58□□□□□ -2
VPS35YJL154C PHO81P17442 1178 aa2.58□□□□□ -2
VPS35YJL154C KCC4P25389 1037 aa2.58□□□□□ -2
VPS35YJL154C HXT4P32467 576 aa2.58□□□□□ -2
VPS35YJL154C TAF5P38129 798 aa2.58□□□□□ -2
VPS35YJL154C GID8P40208 455 aa2.58□□□□□ -2
VPS35YJL154C VPS27P40343 622 aaKnown RBP2.58□□□□□ -2
VPS35YJL154C NOP9P47077 666 aaKnown RBP2.58□□□□□ -2
VPS35YJL154C NSE5Q03718 556 aa2.58□□□□□ -2
VPS35YJL154C YPS7Q06325 596 aa2.58□□□□□ -2
VPS35YJL154C MLC2Q06580 163 aa2.58□□□□□ -2
VPS35YJL154C PSF3Q12146 194 aa2.58□□□□□ -2
VPS35YJL154C YCF1P39109 1515 aaKnown RBP2.58□□□□□ -2
VPS35YJL154C NTH1P32356 751 aa2.58□□□□□ -2
VPS35YJL154C THI80P35202 319 aa2.58□□□□□ -2
VPS35YJL154C NUP60P39705 539 aa2.58□□□□□ -2
VPS35YJL154C NTO1Q12311 748 aa2.58□□□□□ -2
VPS35YJL154C HRP1Q99383 534 aaKnown RBP2.58□□□□□ -2
VPS35YJL154C RPA190P10964 1664 aaKnown RBP2.58□□□□□ -2
VPS35YJL154C ALG7P07286 448 aa2.57□□□□□ -2
VPS35YJL154C YEL076C-AP0CX16 216 aa2.57□□□□□ -2
VPS35YJL154C YLR464WP0CX17 216 aa2.57□□□□□ -2
VPS35YJL154C SEC12P11655 471 aa2.57□□□□□ -2
VPS35YJL154C ABF1P14164 731 aa2.57□□□□□ -2
VPS35YJL154C PEX1P24004 1043 aa2.57□□□□□ -2
VPS35YJL154C PHO3P24031 467 aa2.57□□□□□ -2
VPS35YJL154C STL1P39932 569 aa2.57□□□□□ -2
VPS35YJL154C YEL076CP39971 216 aa2.57□□□□□ -2
VPS35YJL154C YIL092WP40497 633 aa2.57□□□□□ -2
VPS35YJL154C YIL077CP40508 320 aa2.57□□□□□ -2
VPS35YJL154C PAP2P53632 584 aaKnown RBP2.57□□□□□ -2
VPS35YJL154C OMS1Q06668 471 aa2.57□□□□□ -2
VPS35YJL154C STP4Q07351 490 aa2.57□□□□□ -2
VPS35YJL154C ESC8Q08119 714 aa2.57□□□□□ -2
VPS35YJL154C YOR378WQ08902 515 aa2.57□□□□□ -2
VPS35YJL154C HOS1Q12214 470 aa2.57□□□□□ -2
VPS35YJL154C ZRT2Q12436 422 aa2.57□□□□□ -2
VPS35YJL154C CDC25P04821 1589 aa2.57□□□□□ -2
VPS35YJL154C PMI40P29952 429 aaKnown RBP2.57□□□□□ -2
VPS35YJL154C TRM2P33753 639 aa2.57□□□□□ -2
VPS35YJL154C CBR1P38626 284 aaKnown RBP2.57□□□□□ -2
VPS35YJL154C SFB3P38810 929 aa2.57□□□□□ -2
VPS35YJL154C FMO1P38866 432 aa2.57□□□□□ -2
VPS35YJL154C AIM21P40563 679 aa2.57□□□□□ -2
VPS35YJL154C IES1P43579 692 aa2.57□□□□□ -2
VPS35YJL154C BIT61P47041 543 aa2.57□□□□□ -2
VPS35YJL154C ASK10P48361 1146 aa2.57□□□□□ -2
VPS35YJL154C PIP2P52960 996 aa2.57□□□□□ -2
VPS35YJL154C MTD1Q02046 320 aaKnown RBP2.57□□□□□ -2
VPS35YJL154C IRC13Q08630 104 aa2.57□□□□□ -2
VPS35YJL154C HIR3P47171 1648 aa2.56□□□□□ -2
VPS35YJL154C ACO1P19414 778 aaKnown RBP RIP-Chip data2.56□□□□□ -2not detected
VPS35YJL154C ATP12P22135 325 aa2.56□□□□□ -2
VPS35YJL154C ERG6P25087 383 aaKnown RBP2.56□□□□□ -2
VPS35YJL154C DPB3P27344 201 aa2.56□□□□□ -2
VPS35YJL154C PTH2P34222 208 aa2.56□□□□□ -2
VPS35YJL154C COS111P38308 924 aa2.56□□□□□ -2
VPS35YJL154C BCD1P38772 366 aa2.56□□□□□ -2
VPS35YJL154C GET2P40056 285 aa2.56□□□□□ -2
VPS35YJL154C YJL163CP46996 555 aa2.56□□□□□ -2
VPS35YJL154C YAP1802P53309 568 aa2.56□□□□□ -2
VPS35YJL154C LAS17Q12446 633 aa2.56□□□□□ -2
VPS35YJL154C YKL033W-AQ86ZR7 236 aa2.56□□□□□ -2
VPS35YJL154C VPS5Q92331 675 aa2.56□□□□□ -2
VPS35YJL154C YOR093CQ12275 1648 aa2.56□□□□□ -2
VPS35YJL154C PPR1P07272 904 aaPredicted RBP2.56□□□□□ -2
VPS35YJL154C MRS6P32864 603 aaKnown RBP2.56□□□□□ -2
VPS35YJL154C YBR053CP38235 358 aa2.56□□□□□ -2
VPS35YJL154C GIP4P39732 760 aa2.56□□□□□ -2
VPS35YJL154C EAF5P39995 279 aa2.56□□□□□ -2
VPS35YJL154C HIS6P40545 261 aa2.56□□□□□ -2
VPS35YJL154C FAF1P40546 346 aaPredicted RBP2.56□□□□□ -2
VPS35YJL154C BUD8P41698 603 aa2.56□□□□□ -2
VPS35YJL154C CNM67P53865 581 aaKnown RBP2.56□□□□□ -2
Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms