RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 FAM84BQ96KN1 310 aaPredicted RBP21.55■■□□□ 1.04
HMGN3-203ENST00000620514 API5Q9BZZ5 524 aaKnown RBP21.55■■□□□ 1.04
HMGN3-203ENST00000620514 PRDM10Q9NQV6 1147 aa21.55■■□□□ 1.04
HMGN3-203ENST00000620514 F8W031 263 aaPredicted RBP21.54■■□□□ 1.04
HMGN3-203ENST00000620514 MMP14P50281 582 aa21.54■■□□□ 1.04
HMGN3-203ENST00000620514 METTL24Q5JXM2 366 aa21.54■■□□□ 1.04
HMGN3-203ENST00000620514 PCDHAC2Q9Y5I4 1007 aa21.54■■□□□ 1.04
HMGN3-203ENST00000620514 HIBADHP31937 336 aaKnown RBP21.53■■□□□ 1.04
HMGN3-203ENST00000620514 RFX5P48382 616 aaPredicted RBP21.53■■□□□ 1.04
HMGN3-203ENST00000620514 VGLL2Q8N8G2 317 aa21.53■■□□□ 1.04
HMGN3-203ENST00000620514 TDRD7Q8NHU6 1098 aaKnown RBP21.53■■□□□ 1.04
HMGN3-203ENST00000620514 FAM155AB1AL88 458 aaPredicted RBP21.52■■□□□ 1.04
HMGN3-203ENST00000620514 FKBP1AP62942 108 aaKnown RBP21.52■■□□□ 1.04
HMGN3-203ENST00000620514 MOB2Q70IA6 237 aa21.52■■□□□ 1.04
HMGN3-203ENST00000620514 BEGAINQ9BUH8 593 aa21.52■■□□□ 1.04
HMGN3-203ENST00000620514 TSKSQ9UJT2 592 aa21.52■■□□□ 1.04
HMGN3-203ENST00000620514 FAM205AQ6ZU69 1335 aa21.52■■□□□ 1.03
HMGN3-203ENST00000620514 UBTFL1P0CB47 393 aaPredicted RBP21.51■■□□□ 1.03
HMGN3-203ENST00000620514 ZNF157P51786 506 aaPredicted RBP21.51■■□□□ 1.03
HMGN3-203ENST00000620514 NOGQ13253 232 aa21.51■■□□□ 1.03
HMGN3-203ENST00000620514 DLGAP5Q15398 846 aa21.51■■□□□ 1.03
HMGN3-203ENST00000620514 PDE8BO95263 885 aa21.5■■□□□ 1.03
HMGN3-203ENST00000620514 CFAP100Q494V2 611 aa21.5■■□□□ 1.03
HMGN3-203ENST00000620514 IQSEC3Q9UPP2 1182 aaPredicted RBP21.5■■□□□ 1.03
HMGN3-203ENST00000620514 AOX1Q06278 1338 aa21.5■■□□□ 1.03
HMGN3-203ENST00000620514 PAPPA2Q9BXP8 1791 aa21.49■■□□□ 1.03
HMGN3-203ENST00000620514 CAPN15O75808 1086 aa21.49■■□□□ 1.03
HMGN3-203ENST00000620514 HNRNPUQ00839 825 aaKnown RBP eCLIP21.49■■□□□ 1.03
HMGN3-203ENST00000620514 PTPN12Q05209 780 aaKnown RBP21.49■■□□□ 1.03
HMGN3-203ENST00000620514 FBXO33Q7Z6M2 555 aa21.49■■□□□ 1.03
HMGN3-203ENST00000620514 MTMR14Q8NCE2 650 aa21.49■■□□□ 1.03
HMGN3-203ENST00000620514 MEIS3Q99687 375 aa21.49■■□□□ 1.03
HMGN3-203ENST00000620514 UBE2Q2LH0YL09 131 aa21.48■■□□□ 1.03
HMGN3-203ENST00000620514 EYA2O00167 538 aa21.48■■□□□ 1.03
HMGN3-203ENST00000620514 BCAR3O75815 825 aa21.48■■□□□ 1.03
HMGN3-203ENST00000620514 FKBP1BP68106 108 aa21.48■■□□□ 1.03
HMGN3-203ENST00000620514 MFSD14BQ5SR56 506 aa21.48■■□□□ 1.03
HMGN3-203ENST00000620514 APOBEC3FQ8IUX4 373 aaKnown RBP21.48■■□□□ 1.03
HMGN3-203ENST00000620514 ARHGAP45Q92619 1136 aa21.48■■□□□ 1.03
HMGN3-203ENST00000620514 CCDC102AQ96A19 550 aa21.48■■□□□ 1.03
HMGN3-203ENST00000620514 TNNQ9UQP3 1299 aa21.48■■□□□ 1.03
HMGN3-203ENST00000620514 LRRFIP2Q9Y608 721 aaKnown RBP21.48■■□□□ 1.03
HMGN3-203ENST00000620514 KIF16BQ96L93 1317 aa21.48■■□□□ 1.03
HMGN3-203ENST00000620514 SLC10A3P09131 477 aa21.47■■□□□ 1.03
HMGN3-203ENST00000620514 KIF23Q02241 960 aaPredicted RBP21.47■■□□□ 1.03
HMGN3-203ENST00000620514 VPS37DQ86XT2 251 aa21.47■■□□□ 1.03
HMGN3-203ENST00000620514 PRMT6Q96LA8 375 aaPredicted RBP21.47■■□□□ 1.03
HMGN3-203ENST00000620514 CLRN2A0PK11 232 aa21.46■■□□□ 1.03
HMGN3-203ENST00000620514 SPDYE2BA6NHP3 402 aa21.46■■□□□ 1.03
HMGN3-203ENST00000620514 SPDYE6P0CI01 402 aa21.46■■□□□ 1.03
HMGN3-203ENST00000620514 FGFR2P21802 821 aa21.46■■□□□ 1.03
HMGN3-203ENST00000620514 BCAMP50895 628 aa21.46■■□□□ 1.03
HMGN3-203ENST00000620514 CHAF1AQ13111 956 aaPredicted RBP21.46■■□□□ 1.03
HMGN3-203ENST00000620514 TTLL12Q14166 644 aaPredicted RBP21.46■■□□□ 1.03
HMGN3-203ENST00000620514 INTS3Q68E01 1043 aaKnown RBP21.46■■□□□ 1.03
HMGN3-203ENST00000620514 ATG9AQ7Z3C6 839 aa21.46■■□□□ 1.03
HMGN3-203ENST00000620514 RASAL3Q86YV0 1011 aa21.46■■□□□ 1.03
HMGN3-203ENST00000620514 SIL1Q9H173 461 aa21.46■■□□□ 1.03
HMGN3-203ENST00000620514 RBM5P52756 815 aaKnown RBP eCLIP21.45■■□□□ 1.02
HMGN3-203ENST00000620514 PUM3Q15397 648 aaKnown RBP21.45■■□□□ 1.02
HMGN3-203ENST00000620514 GRIK5Q16478 980 aa21.45■■□□□ 1.02
HMGN3-203ENST00000620514 CAVIN4Q5BKX8 364 aa21.45■■□□□ 1.02
HMGN3-203ENST00000620514 TTF2Q9UNY4 1162 aaKnown RBP21.45■■□□□ 1.02
HMGN3-203ENST00000620514 TRIM27P14373 513 aa21.44■■□□□ 1.02
HMGN3-203ENST00000620514 NF2P35240 595 aa21.44■■□□□ 1.02
HMGN3-203ENST00000620514 PRKG1Q13976 671 aa21.44■■□□□ 1.02
HMGN3-203ENST00000620514 FRAT1Q92837 279 aaPredicted RBP21.44■■□□□ 1.02
HMGN3-203ENST00000620514 DEFB129Q9H1M3 183 aa21.44■■□□□ 1.02
HMGN3-203ENST00000620514 PA2G4Q9UQ80 394 aaKnown RBP21.44■■□□□ 1.02
HMGN3-203ENST00000620514 CA12O43570 354 aa21.43■■□□□ 1.02
HMGN3-203ENST00000620514 FRAT2O75474 233 aaPredicted RBP21.43■■□□□ 1.02
HMGN3-203ENST00000620514 IFIT1P09914 478 aaKnown RBP21.43■■□□□ 1.02
HMGN3-203ENST00000620514 VEZTQ9HBM0 779 aa21.43■■□□□ 1.02
HMGN3-203ENST00000620514 FZD1Q9UP38 647 aa21.43■■□□□ 1.02
HMGN3-203ENST00000620514 ARAP2Q8WZ64 1704 aa21.43■■□□□ 1.02
HMGN3-203ENST00000620514 ECM29Q5VYK3 1845 aa21.43■■□□□ 1.02
HMGN3-203ENST00000620514 MYO1BO43795 1136 aa21.42■■□□□ 1.02
HMGN3-203ENST00000620514 ATF7IPQ6VMQ6 1270 aa21.42■■□□□ 1.02
HMGN3-203ENST00000620514 HDAC5Q9UQL6 1122 aa21.42■■□□□ 1.02
HMGN3-203ENST00000620514 COL1A1P02452 1464 aaPredicted RBP21.41■■□□□ 1.02
HMGN3-203ENST00000620514 IPO8O15397 1037 aaKnown RBP21.41■■□□□ 1.02
HMGN3-203ENST00000620514 CIAO1O76071 339 aa21.41■■□□□ 1.02
HMGN3-203ENST00000620514 SLC5A1P13866 664 aa21.41■■□□□ 1.02
HMGN3-203ENST00000620514 LPIN2Q92539 896 aa21.41■■□□□ 1.02
HMGN3-203ENST00000620514 CLUAP1Q96AJ1 413 aa21.41■■□□□ 1.02
HMGN3-203ENST00000620514 CSRNP1Q96S65 589 aa21.41■■□□□ 1.02
HMGN3-203ENST00000620514 SERPINA10Q9UK55 444 aa21.41■■□□□ 1.02
HMGN3-203ENST00000620514 GNAI3P08754 354 aa21.4■■□□□ 1.02
HMGN3-203ENST00000620514 CRKP46108 304 aa21.4■■□□□ 1.02
HMGN3-203ENST00000620514 TDRD3Q9H7E2 651 aaKnown RBP21.4■■□□□ 1.02
HMGN3-203ENST00000620514 ZNF70Q9UC06 446 aaPredicted RBP21.4■■□□□ 1.02
HMGN3-203ENST00000620514 FBXO3Q9UK99 471 aa21.4■■□□□ 1.02
HMGN3-203ENST00000620514 SSC5DA1L4H1 1573 aa21.4■■□□□ 1.02
HMGN3-203ENST00000620514 ARMC9Q7Z3E5 817 aa21.39■■□□□ 1.01
HMGN3-203ENST00000620514 DZIP1LQ8IYY4 767 aaKnown RBP21.39■■□□□ 1.01
HMGN3-203ENST00000620514 CEP126Q9P2H0 1117 aa21.39■■□□□ 1.01
HMGN3-203ENST00000620514 ANGEL1Q9UNK9 670 aaKnown RBP21.39■■□□□ 1.01
HMGN3-203ENST00000620514 PPP2R3BQ9Y5P8 575 aa21.39■■□□□ 1.01
HMGN3-203ENST00000620514 ATP2B3Q16720 1220 aa21.38■■□□□ 1.01
HMGN3-203ENST00000620514 SPDYE2Q495Y8 402 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms